docs: add comments explaining summarizer constants

小橘 <xiaoju@shazhou.work>

.gitignore

@@ -4,3 +4,4 @@ bun.lock
 *.tgz
 tsconfig.tsbuildinfo
 .npmrc
+

CLAUDE.md

@@ -2,7 +2,7 @@
 
 ## Project Overview
 
-**@uncaged/workflow** is a workflow engine that executes single-file ESM bundles. Each workflow is a self-contained `.esm.js` file with an XXH64 hash as its version identifier.
+This monorepo implements a workflow engine that executes single-file ESM bundles. Each workflow is a self-contained `.esm.js` file with an XXH64 hash as its version identifier. Shared types live in `@uncaged/workflow-protocol`; bundle authors typically depend on `@uncaged/workflow-runtime`.
 
 ### Key Terms
 
@@ -10,7 +10,7 @@
 |---------|-----------|
 | **Workflow** | A single-file ESM module that exports `run` (workflow function) and `descriptor` (metadata). Identified by its XXH64 hash (Crockford Base32). |
 | **Bundle** | The physical `.esm.js` file stored in `~/.uncaged/workflow/bundles/`. |
-| **Thread** | A single execution of a workflow, identified by a ULID. Persisted as `.data.jsonl` + `.info.jsonl`. |
+| **Thread** | A single execution of a workflow, identified by a ULID. State lives in CAS (linked nodes); active threads indexed in `threads.json`; completed rows in `history/*.jsonl`. Debug logs use `.info.jsonl`. |
 | **Role** | A named actor within a workflow. Each role produces output with typed `meta`. |
 | **Registry** | `workflow.yaml` — maps workflow names to current/historical bundle hashes. |
 
@@ -19,14 +19,27 @@
 ```
 workflow/
   packages/
-    workflow/       # @uncaged/workflow — core lib (types, hash, ULID, JSONL, registry)
-    cli-workflow/   # @uncaged/cli-workflow — CLI (uncaged-workflow command)
+    workflow-protocol/              # @uncaged/workflow-protocol — shared types + Result
+    workflow-runtime/               # @uncaged/workflow-runtime — createWorkflow, type re-exports
+    workflow-util/                  # @uncaged/workflow-util — Base32, ULID, logger, storage paths, refs helpers
+    workflow-reactor/               # @uncaged/workflow-reactor — LLM fn + thread reactor (tool calls)
+    workflow-cas/                   # @uncaged/workflow-cas — CAS store, hash, Merkle
+    workflow-register/              # @uncaged/workflow-register — bundle validation, registry YAML, model resolution
+    workflow-execute/               # @uncaged/workflow-execute — engine, extract, fork, GC, workflowAsAgent
+    cli-workflow/                   # @uncaged/cli-workflow — uncaged-workflow CLI
+    workflow-agent-cursor/          # @uncaged/workflow-agent-cursor
+    workflow-agent-hermes/          # @uncaged/workflow-agent-hermes
+    workflow-agent-llm/             # @uncaged/workflow-agent-llm
+    workflow-util-agent/            # @uncaged/workflow-util-agent — buildAgentPrompt, spawnCli
+    workflow-template-develop/      # @uncaged/workflow-template-develop
+    workflow-template-solve-issue/  # @uncaged/workflow-template-solve-issue
+    workflow-dashboard/             # @uncaged/workflow-dashboard — React dashboard (private app)
   docs/             # RFCs, conventions
   biome.json        # root Biome config
   tsconfig.json     # root TypeScript config
 ```
 
-- `workflow` is the core; `cli-workflow` depends on it
+- Execution stack layers: `workflow-protocol` → (`workflow-runtime`, `workflow-util`, `workflow-reactor`) → (`workflow-cas`, `workflow-register`) → `workflow-execute` → `cli-workflow`
 - Packages use `workspace:*` protocol
 
 ## Language & Paradigm
@@ -167,10 +180,10 @@ type Result<T, E = Error> = { ok: true; value: T } | { ok: false; error: E };
 
 Never use `console.log/warn/error` directly — Biome's `noConsole` rule enforces this.
 
-All logging goes through the structured logger from `@uncaged/workflow`:
+All logging goes through the structured logger from `@uncaged/workflow-util`:
 
 ```typescript
-import { createLogger } from "@uncaged/workflow";
+import { createLogger } from "@uncaged/workflow-util";
 
 const log = createLogger();
 

README.md

@@ -8,7 +8,7 @@ A workflow engine that executes single-file ESM bundles. Each workflow is a self
 |---------|-------------|
 | **Workflow** | A single-file ESM module exporting `run` (workflow function) and `descriptor` (metadata). Identified by its XXH64 hash. |
 | **Bundle** | The physical `.esm.js` file stored in `~/.uncaged/workflow/bundles/`. |
-| **Thread** | A single execution of a workflow, identified by a ULID. Persisted as `.data.jsonl` + `.info.jsonl`. |
+| **Thread** | A single execution of a workflow, identified by a ULID. CAS-backed chain plus `threads.json` / `history/*.jsonl`; `.info.jsonl` for debug logs. |
 | **Role** | A named actor within a workflow. Each role produces output with typed `meta`. Roles live inside template packages (`src/roles/`). |
 | **Registry** | `workflow.yaml` — maps workflow names to current/historical bundle hashes. |
 | **CAS** | Content-Addressed Storage — bundles are immutable and addressed by hash. |

docs/architecture.md

@@ -1,6 +1,6 @@
-# @uncaged/workflow — Architecture
+# Uncaged workflow — Architecture
 
-**Last updated:** 2026-05-06 by 小橘 🍊（NEKO Team）
+**Last updated:** 2026-05-09
 
 ---
 
@@ -8,72 +8,106 @@
 
 A workflow engine that executes single-file ESM bundles. Each workflow is a self-contained `.esm.js` file identified by its XXH64 hash (Crockford Base32). No daemon — processes start on demand and exit when done.
 
-## Package Structure
+The implementation lives in **15** Bun workspace packages under `packages/`, using the `workspace:*` protocol.
 
-| Package | npm Name | Purpose |
-|---------|----------|---------|
-| `workflow` | `@uncaged/workflow` | Core: types, engine, ExtractFn, hash/ULID/registry |
-| `cli-workflow` | `@uncaged/cli-workflow` | CLI: `uncaged-workflow` command |
-| `workflow-agent-cursor` | `@uncaged/workflow-agent-cursor` | Cursor CLI agent (extracts workspace from ctx) |
-| `workflow-agent-hermes` | `@uncaged/workflow-agent-hermes` | Hermes CLI agent |
-| `workflow-agent-llm` | `@uncaged/workflow-agent-llm` | OpenAI-compatible LLM agent |
-| `workflow-template-develop` | `@uncaged/workflow-template-develop` | Develop workflow template (roles in `src/roles/`) |
-| `workflow-template-solve-issue` | `@uncaged/workflow-template-solve-issue` | Solve-issue workflow template (roles in `src/roles/`) |
-| `workflow-util-agent` | `@uncaged/workflow-util-agent` | `buildAgentPrompt` + `spawnCli` utilities |
+## Package map
 
-Monorepo with **bun workspace**, `workspace:*` protocol.
+Grouped by responsibility (npm name → folder).
 
-## Core Types
+| Layer | Package | One-line role |
+|-------|---------|----------------|
+| Contract | `@uncaged/workflow-protocol` → `workflow-protocol` | Shared TypeScript types and `Result` helpers; peer `zod` only — no other workspace deps. |
+| Author API | `@uncaged/workflow-runtime` → `workflow-runtime` | `createWorkflow` and re-exports of protocol workflow types for bundle authors. |
+| Shared infra | `@uncaged/workflow-util` → `workflow-util` | Base32/ULID, logger, storage root paths, global CAS dir, ref-field helpers. |
+| LLM plumbing | `@uncaged/workflow-reactor` → `workflow-reactor` | `createLlmFn`, `createThreadReactor`, and related tool-call types for threaded LLM invocation. |
+| CAS | `@uncaged/workflow-cas` → `workflow-cas` | `CasStore` implementation, XXH64 hashing, Merkle helpers over CAS payloads. |
+| Registry / bundles | `@uncaged/workflow-register` → `workflow-register` | Bundle validation & dynamic export extraction, `workflow.yaml` registry I/O, provider/model resolution. |
+| Engine | `@uncaged/workflow-execute` → `workflow-execute` | Thread execution, worker entry path, fork/GC, extract pipeline, `workflowAsAgent`. |
+| CLI | `@uncaged/cli-workflow` → `cli-workflow` | `uncaged-workflow` binary (depends on engine, registry, CAS, protocol, util, runtime). |
+| Agent adapters | `@uncaged/workflow-agent-cursor` → `workflow-agent-cursor` | `AgentFn` via `cursor-agent` CLI + workspace extraction. |
+| | `@uncaged/workflow-agent-hermes` → `workflow-agent-hermes` | `AgentFn` via `hermes chat` CLI. |
+| | `@uncaged/workflow-agent-llm` → `workflow-agent-llm` | `AgentFn` via OpenAI-compatible HTTP (`LlmProvider` from runtime). |
+| Agent shared | `@uncaged/workflow-util-agent` → `workflow-util-agent` | `buildAgentPrompt`, `spawnCli` for CLI-backed agents. |
+| Templates | `@uncaged/workflow-template-develop` → `workflow-template-develop` | Develop workflow definition, roles, descriptor builder. |
+| | `@uncaged/workflow-template-solve-issue` → `workflow-template-solve-issue` | Solve-issue workflow definition, roles, descriptor builder. |
+| Dashboard | `@uncaged/workflow-dashboard` → `workflow-dashboard` | Private Vite + React app (`src/main.tsx`); only `react` / `react-dom` dependencies — no workspace packages. |
 
-```typescript
-// --- Sentinel values ---
-const START = "__start__";
-const END = "__end__";
+## Dependency graph (workspace packages)
 
-// --- RoleMeta: maps role names → their meta types ---
-type RoleMeta = Record<string, Record<string, unknown>>;
+Bottom-up layering for the execution stack:
 
-// --- Role Definition: pure data, no execution logic ---
-type RoleDefinition<Meta> = {
-  description: string;      // human-readable
-  systemPrompt: string;     // given to agent
-  extractPrompt: string;    // given to extractor
-  schema: z.ZodType<Meta>;  // meta shape (Zod v4)
-};
-
-// --- Workflow Definition: pure data, no agent binding ---
-type WorkflowDefinition<M extends RoleMeta> = {
-  description: string;
-  roles: { [K in keyof M & string]: RoleDefinition<M[K]> };
-  moderator: Moderator<M>;
-};
-
-// --- Agent: raw string output, reads role info from context ---
-type AgentFn = (ctx: AgentContext) => Promise<string>;
-
-// --- Agent Binding: runtime assignment ---
-type AgentBinding = {
-  agent: AgentFn;
-  overrides?: Partial<Record<string, AgentFn>>;
-};
-
-// --- Extract: structured data from context ---
-type ExtractFn = <T>(schema: z.ZodType<T>, prompt: string, ctx: ExtractContext) => Promise<T>;
-
-// --- Moderator: pure routing function ---
-type Moderator<M extends RoleMeta> = (ctx: ModeratorContext<M>) => (keyof M & string) | typeof END;
-
-// --- Composition ---
-// createWorkflow(def, binding, extract) => WorkflowFn
+```mermaid
+flowchart BT
+  subgraph L0["Layer 0 — contract"]
+    protocol["@uncaged/workflow-protocol"]
+  end
+  subgraph L1["Layer 1 — on protocol"]
+    runtime["@uncaged/workflow-runtime"]
+    util["@uncaged/workflow-util"]
+    reactor["@uncaged/workflow-reactor"]
+  end
+  subgraph L2["Layer 2 — protocol + util"]
+    cas["@uncaged/workflow-cas"]
+    register["@uncaged/workflow-register"]
+  end
+  subgraph L3["Layer 3 — engine"]
+    execute["@uncaged/workflow-execute"]
+  end
+  subgraph L4["Layer 4 — CLI"]
+    cli["@uncaged/cli-workflow"]
+  end
+  runtime --> protocol
+  util --> protocol
+  reactor --> protocol
+  cas --> protocol
+  cas --> util
+  register --> protocol
+  register --> util
+  execute --> protocol
+  execute --> runtime
+  execute --> util
+  execute --> cas
+  execute --> reactor
+  execute --> register
+  cli --> protocol
+  cli --> util
+  cli --> cas
+  cli --> execute
+  cli --> register
+  cli --> runtime
 ```
 
-## Three-Phase Engine Loop
+**Adjacent consumers** (not in the main CLI stack):
 
-Each role execution has three distinct phases with progressive context:
+- `@uncaged/workflow-util-agent` → `@uncaged/workflow-runtime`
+- `@uncaged/workflow-agent-llm` → `@uncaged/workflow-runtime`
+- `@uncaged/workflow-agent-cursor` → `@uncaged/workflow-runtime`, `@uncaged/workflow-util-agent`, `zod`
+- `@uncaged/workflow-agent-hermes` → `@uncaged/workflow-runtime`, `@uncaged/workflow-util-agent`
+- `@uncaged/workflow-template-develop` → `@uncaged/workflow-register`, `@uncaged/workflow-runtime`, `zod`
+- `@uncaged/workflow-template-solve-issue` → `@uncaged/workflow-register`, `@uncaged/workflow-runtime`, `zod` (dev-only workspace deps: `@uncaged/workflow-cas`, `@uncaged/workflow-execute` for tests/tooling per `package.json`)
+
+## Package roles (detail)
+
+- **`workflow-protocol`** — Pure types (`WorkflowFn`, contexts, `CasStore` interface, descriptor shapes), `START` / `END`, `ok` / `err`. Depends only on peer `zod` for schema-related types in signatures.
+- **`workflow-runtime`** — Workflow author surface: `createWorkflow` from `src/create-workflow.js`, re-exports protocol types/constants used when authoring bundles.
+- **`workflow-util`** — Cross-cutting utilities: Crockford Base32, ULID, `createLogger`, `getDefaultWorkflowStorageRoot`, `getGlobalCasDir`, ref normalization; re-exports `ok`/`err` from protocol.
+- **`workflow-cas`** — Filesystem CAS (`createCasStore`), `hashString` / `hashWorkflowBundleBytes`, Merkle node serialization and helpers (`merkle.js`).
+- **`workflow-register`** — Bundle pipeline (`validateWorkflowBundle`, `extractBundleExports`, descriptor builders), registry YAML read/write, `resolveModel` / `splitProviderModelRef`.
+- **`workflow-execute`** — `executeThread`, supervisor/worker wiring (`engine/`), fork/GC/pause gate, `createExtract` + LLM extract helpers (`extract/`), `workflowAsAgent`. Imports `@uncaged/workflow-reactor` for LLM-backed extract/supervisor paths (`extract-fn.ts`, `supervisor.ts`).
+- **`workflow-reactor`** — `createLlmFn`, `createThreadReactor`, and thread tool-invocation types — consumed by `workflow-execute`.
+- **`cli-workflow`** — CLI commands and HTTP/dashboard-related wiring (`hono`, `yaml`); composes register + execute + CAS + util.
+- **`workflow-agent-*`** — Replaceable `AgentFn` implementations (Cursor / Hermes CLIs, or HTTP LLM).
+- **`workflow-util-agent`** — Shared prompt assembly and subprocess spawning for CLI agents.
+- **`workflow-template-*`** — Concrete `WorkflowDefinition` graphs + Zod role schemas + descriptor builders for publishing bundles.
+- **`workflow-dashboard`** — Standalone React UI; no published library entry matching `src/index.ts`.
+
+## Three-phase engine loop
+
+Each role round is implemented in `packages/workflow-runtime/src/create-workflow.ts` (`advanceOneRound`): moderator → agent → extractor, with progressive context types from `@uncaged/workflow-protocol`.
 
 ```
 ┌─→ Phase 1: MODERATOR
-│   Context: ModeratorContext { threadId, start, steps }
+│   Context: ModeratorContext { threadId, depth, start, steps }
 │   Action:  moderator(ctx) → role name | END
 │
 │   Phase 2: AGENT
@@ -82,98 +116,92 @@ Each role execution has three distinct phases with progressive context:
 │
 │   Phase 3: EXTRACTOR
 │   Context: ExtractContext = AgentCtx + { agentContent }
-│   Action:  extract(schema, extractPrompt, ctx) → typed meta
+│   Action:  runtime.extract(schema, extractPrompt, ctx) → typed meta
 │
-│   Merge: RoleStep { role, content, meta, timestamp }
+│   Merge: RoleStep { role, contentHash, meta, refs, timestamp }
 │   Append to steps
 └─────────────────────────────────────────────────────┘
 ```
 
-### Context Types (progressive)
+### Context types (progressive)
+
+Defined in `packages/workflow-protocol/src/types.ts`:
 
 ```typescript
-// Phase 1: Moderator sees accumulated state only
-type ModeratorContext<M> = {
-  threadId: string;
-  start: StartStep;
-  steps: RoleStep<M>[];
-};
-
-// Phase 2: Agent knows its identity
+type ModeratorContext<M> = ThreadContext<M>;
 type AgentContext<M> = ModeratorContext<M> & {
   currentRole: { name: string; systemPrompt: string };
 };
-
-// Phase 3: Extractor has agent output
-type ExtractContext<M> = AgentContext<M> & {
-  agentContent: string;
-};
-
-// ThreadContext is an alias for AgentContext (backward compat)
-type ThreadContext<M> = AgentContext<M>;
+type ExtractContext<M> = AgentContext<M> & { agentContent: string };
 ```
 
-### Key Properties
+### Key properties
 
-- **Moderator is synchronous and pure** — no I/O, no state mutation
-- **Agent gets context, not instructions** — reads `ctx.currentRole.systemPrompt`
-- **Extractor is a general tool** — not limited to post-agent extraction; agents can use it too (e.g. Cursor agent extracts workspace path before execution)
-- **extractPrompt is a call parameter**, not context state — different callers use different prompts
+- **Moderator is synchronous and pure** — no I/O, no state mutation inside `createWorkflow`’s moderator call path.
+- **Agent receives `AgentContext`** — reads `ctx.currentRole.systemPrompt`; raw output becomes `agentContent` for extract.
+- **Extractor is `WorkflowRuntime.extract`** — supplied by the engine from registry-resolved LLM config (`workflow-execute`); stores agent body in CAS and yields `contentHash` + `refs` on each step (`create-workflow.ts`).
+- **`extractPrompt` is a call parameter** on `RoleDefinition`, not implicit context state.
 
-## Agent Information Sources
+## Agent information sources
 
 An agent has exactly three information sources:
 
 1. **Prior knowledge** — LLM training, agent memory, agent skills
-2. **Thread context** — `AgentContext` (start, steps, currentRole)
+2. **Thread context** — `AgentContext` (`start`, `steps`, `currentRole`)
 3. **Derived information** — from 1 & 2 (e.g. tool calls, shell commands)
 
-No hidden environment parameters. If an agent needs something (like a workspace path), it extracts it from context using `ExtractFn`.
+No hidden environment parameters. If an agent needs something (like a workspace path), it obtains it via `ExtractFn` (e.g. Cursor agent).
 
-## Bundle Contract
+## Bundle contract
 
-A workflow bundle is a single `.esm.js` file with two named exports:
+A workflow bundle is a single `.esm.js` file with two named exports (see `WorkflowFn` / `WorkflowDescriptor` in `packages/workflow-protocol/src/types.ts`):
 
 ```typescript
-// Named exports (no default export)
 export const descriptor: WorkflowDescriptor;
 export const run: WorkflowFn;
 
 type WorkflowFn = (
-  input: { prompt: string; steps: RoleOutput[] },
-  options: { threadId: string; maxRounds: number },
-) => AsyncGenerator<RoleOutput, WorkflowResult>;
+  thread: ThreadContext,
+  runtime: WorkflowRuntime,
+) => AsyncGenerator<RoleOutput, WorkflowCompletion>;
 ```
 
+`RoleOutput` carries `contentHash`, `meta`, and `refs` (agent text lives in CAS, addressed by hash).
+
 ### Constraints
 
 - Single `.esm.js` file
-- No dynamic `import()`
-- All static imports must be Node built-in modules only
-- XXH64 hash (Crockford Base32) = globally unique version ID
+- No dynamic `import()` in bundles (loader exempt in engine)
+- Portable bundle static imports are constrained by validation in `@uncaged/workflow-register` (`validateWorkflowBundle`)
+- XXH64 hash (Crockford Base32) = version ID
 
 ### Why AsyncGenerator?
 
-- Each `yield` → engine writes to `.data.jsonl`, checks abort/pause
-- `return` → engine marks thread complete
-- Fork = pass historical steps as `input.steps` to a new generator
-- Zero injection — bundle doesn't import from the engine
+- Each `yield` lets `workflow-execute` persist state, CAS rows, and enforce pause/abort
+- `return` supplies `WorkflowCompletion`
+- Fork replays historical steps into a new thread context
+- Bundle does not import the engine — only protocol/runtime types at build time
 
-## Storage Layout
+## Storage layout
 
 ```
 ~/.uncaged/workflow/
+├── cas/                           # Global content-addressed blobs (see getGlobalCasDir)
 ├── bundles/
-│   ├── C9NMV6V2TQT81.esm.js     # Crockford Base32 of XXH64
-│   └── C9NMV6V2TQT81.yaml       # Role descriptor
+│   ├── C9NMV6V2TQT81.esm.js       # Crockford Base32 of XXH64
+│   ├── C9NMV6V2TQT81.yaml         # Role descriptor sidecar (when present)
+│   └── C9NMV6V2TQT81/             # Per-hash bundle dir (alongside or instead of loose files)
+│       ├── threads.json           # Active threads: threadId → { head, start, updatedAt }
+│       └── history/
+│           └── 2026-05-09.jsonl   # Completed threads (one JSON object per line)
 ├── logs/                          # One folder per bundle hash
 │   └── C9NMV6V2TQT81/
-│       ├── 01KQXKW…YG.data.jsonl  # Thread state
-│       └── 01KQXKW…YG.info.jsonl  # Debug log
+│       ├── 01KQXKW…YG.running     # Present while worker executes this thread (optional)
+│       └── 01KQXKW…YG.info.jsonl   # Debug log
 └── workflow.yaml                  # Registry
 ```
 
-### ID Encoding: Crockford Base32
+### ID encoding: Crockford Base32
 
 - Case-insensitive, filesystem-safe, no ambiguous chars (0/O, 1/I/L)
 - Bundle hash: XXH64 → 13-char
@@ -181,45 +209,31 @@ type WorkflowFn = (
 
 ### Registry (`workflow.yaml`)
 
-```yaml
-workflows:
-  solve-issue:
-    hash: "C9NMV6V2TQT81"
-    timestamp: 1714963200000
-    history:
-      - hash: "A7BKR3M1NPQ40"
-        timestamp: 1714876800000
-```
+Managed by `@uncaged/workflow-register` (`readWorkflowRegistry`, `writeWorkflowRegistry`, …). Shape includes workflow entries and a top-level `config` section used for extract/supervisor model resolution.
 
-### Thread JSONL
+### Thread storage (CAS + index)
 
-**`.data.jsonl`** — Line 1: start record, Line 2+: role outputs
+Thread execution state is a chain of immutable CAS nodes (`StartNode`, `StateNode`, content Merkle blobs). Per bundle:
 
-```jsonc
-// Start record
-{ "name": "solve-issue", "hash": "C9NMV6V2TQT81", "threadId": "01KQXKW…",
-  "parameters": { "prompt": "Fix bug #3", "options": { "maxRounds": 5 } },
-  "timestamp": 1714963200000 }
-// Role output
-{ "role": "planner", "content": "...", "meta": { "phases": [...] }, "timestamp": ... }
-```
+- **`threads.json`** — only in-flight threads (`head`, `start`, `updatedAt`).
+- **`history/{YYYY-MM-DD}.jsonl`** — completed threads (`threadId`, `head`, `start`, `completedAt`).
+- **CAS (`cas/`)** — payloads and refs for replay, GC, and fork sharing.
 
-**`.info.jsonl`** — Structured debug log
+**`.info.jsonl`** — Structured debug log via `@uncaged/workflow-util` `createLogger`:
 
 ```jsonc
 { "tag": "4KNMR2PX", "content": "Loading bundle...", "timestamp": ... }
 ```
 
-Tags are 8-char Crockford Base32 (40-bit random), one per call site. `grep "4KNMR2PX"` → instant code location.
+Tags are 8-char Crockford Base32 (40-bit random), one per call site. `grep "4KNMR2PX"` → code location.
 
-## Execution Model
+## Execution model
 
-- **No daemon.** `uncaged-workflow run <name>` starts a worker process
-- Same bundle's threads share one process (memory efficiency)
-- Process exits when all threads complete
-- Thread termination via IPC within the process
+- **No daemon.** `uncaged-workflow run <name>` starts a worker process (`workflow-execute` worker entry via `getWorkerHostScriptPath`)
+- Threads share bundle-scoped workers as implemented in CLI/engine
+- Pause/resume/abort via engine IPC and pause gate (`createThreadPauseGate`)
 
-## CLI Commands
+## CLI commands
 
 | Priority | Command | Description |
 |----------|---------|-------------|
@@ -239,18 +253,16 @@ Tags are 8-char Crockford Base32 (40-bit random), one per call site. `grep "4KNM
 | P2 | `resume <thread-id>` | Resume a paused thread |
 | P3 | `fork <thread-id> [--from-role <role>]` | Fork from historical state |
 
-All commands implemented and tested. ✅
-
-## Design Decisions
+## Design decisions
 
 | Decision | Rationale |
 |----------|-----------|
 | **Role = pure data** | Decouples definition from execution; same role with different agents |
-| **Agent bound at runtime** | WorkflowDefinition is reusable; agent choice is deployment concern |
-| **Three-phase context** | Each phase sees only what it needs; clean separation |
-| **ExtractFn as general tool** | Agents use it for pre-execution extraction; engine uses it for meta |
-| **Single-file ESM** | Hash = version, no dependency hell, self-contained |
-| **No daemon** | OS handles process lifecycle; unnecessary complexity |
+| **Agent bound at runtime** | `WorkflowDefinition` is reusable; agent choice is deployment concern |
+| **Three-phase context** | Each phase sees only what it needs; types live in `workflow-protocol` |
+| **`WorkflowRuntime.extract` + CAS `contentHash`** | Large agent bodies deduplicated globally; Merkle roots summarize threads |
+| **`workflow-reactor` split** | LLM tool-calling loop isolated from filesystem/registry concerns |
+| **Single-file ESM** | Hash = version, self-contained bundle |
+| **No daemon** | OS handles process lifecycle |
 | **Crockford Base32** | Filesystem-safe, readable, compact |
-| **No concurrency in registry** | Different workflows have different constraints; belongs at workflow/role level |
-| **No dryRun** | Tests use mock agents + mock fetch; simpler architecture |
+| **15-package split** | Clear boundaries: protocol ↔ runtime author API ↔ util/CAS/register ↔ execute ↔ CLI ↔ agents/templates/UI |

docs/plans/2025-05-07-workflow-as-agent.md

@@ -1,5 +1,7 @@
 # Workflow-as-Agent Implementation Plan
 
+> ⚠️ This plan references the pre-split package structure. File paths have changed.
+
 > **For Hermes:** Use subagent-driven-development skill to implement this plan task-by-task.
 
 **Goal:** Enable workflows to invoke other workflows as agents, backed by global CAS and refs tracking.

docs/plans/2026-05-09-cas-thread-storage.md

@@ -0,0 +1,262 @@
+# RFC: CAS-Based Thread Storage
+
+> Status: Draft
+> Author: 小橘 🍊（NEKO Team）
+> Date: 2026-05-09
+
+## Summary
+
+Replace `.data.jsonl` with a fully CAS-based thread state chain. Threads become linked lists of immutable CAS nodes, indexed by a per-bundle `threads.json`.
+
+## Motivation
+
+`.data.jsonl` is a flat append-only file with three different row formats (start, role step, end). This makes forking expensive (copy file), deduplication impossible (forked threads repeat shared history), and GC complex (must parse every row to find CAS refs).
+
+Threads are inherently immutable append-only sequences — a natural fit for CAS hash chains, similar to git's commit DAG.
+
+## Design
+
+### Node Types
+
+Two CAS node types, using the existing `{ type, payload, refs }` CAS blob structure:
+
+#### StartNode
+
+Contains workflow-level parameters. **No threadId** (because the same StartNode can be shared across forks). Prompt is stored as a CAS blob and referenced via `refs[0]`.
+
+```
+CAS blob:
+{
+  type: "start",
+  payload: {
+    name: "solve-issue",
+    hash: "BUNDLE_HASH",
+    maxRounds: 10,
+    depth: 0
+  },
+  refs: [
+    <prompt_hash>    // refs[0]: initial task prompt (CAS blob)
+  ]
+}
+```
+
+- No `role`, `content`, `meta` — this is not a step, it's workflow metadata
+- Prompt is **not** inline — it lives in CAS and is referenced by hash
+
+#### StateNode
+
+One per role step (including `__end__`).
+
+```
+CAS blob:
+{
+  type: "state",
+  payload: {
+    role: "coder",
+    meta: { ... },
+    start: "<start_hash>",
+    content: "<content_merkle_hash>",
+    ancestors: ["<parent_hash>", "<grandparent_hash>", ...],
+    compact: null,
+    timestamp: 1234567890
+  },
+  refs: [<start_hash>, <content_hash>, <parent_hash>, ...]
+}
+```
+
+**Payload is the source of truth.** Application code reads named fields from payload. `refs[]` is a **GC index** — automatically derived from payload by collecting all CAS hashes. GC only scans `refs[]` without understanding payload structure.
+
+**Payload fields:**
+
+| Field | Type | Meaning |
+|-------|------|---------|
+| `role` | `string` | Role name, or `"__end__"` for completion |
+| `meta` | `object` | Structured metadata extracted from agent output |
+| `start` | `string` | StartNode hash |
+| `content` | `string` | Content Merkle node hash (carries role artifact refs) |
+| `ancestors` | `string[]` | `[parent, grandparent, ...]` — up to 11 entries (1 parent + 10 skip-list). Empty for first step after start. `ancestors[0]` is the direct parent. |
+| `compact` | `string \| null` | CAS hash of a compacted summary of all nodes before this one. When present, LLM context assembly can use this instead of walking the full chain. |
+| `timestamp` | `number` | Unix timestamp in ms |
+
+### Content Merkle Node
+
+The content at `refs[2]` of each StateNode is itself a CAS Merkle node. This is where **role artifact references** live:
+
+```
+CAS blob:
+{
+  type: "content",
+  payload: "<role output text>",
+  refs: [
+    <artifact_hash_1>,   // e.g. a commit, a file, a sub-result
+    <artifact_hash_2>,
+    ...
+  ]
+}
+```
+
+The Extractor is responsible for producing both `meta` and `refs` from raw agent output:
+
+```
+Agent raw output
+    ↓
+Extractor → { meta, contentPayload, refs[] }
+    ↓
+CAS put content Merkle: { type: "content", payload: contentPayload, refs }
+    ↓ contentHash
+StateNode: { ..., refs: [start, parent, contentHash, ...ancestors] }
+```
+
+This keeps StateNode refs fixed and simple. All role-specific artifact references are encapsulated in the content Merkle node. GC follows: `thread head → StateNode.refs → content Merkle.refs → artifacts`, full chain recursive.
+
+### End Node
+
+An end is just a StateNode with `role: "__end__"`:
+
+```
+{
+  type: "state",
+  payload: {
+    role: "__end__",
+    meta: { returnCode: 0, summary: "completed successfully" },
+    start: "<start_hash>",
+    content: "<content_hash>",
+    ancestors: ["<parent_hash>", ...],
+    compact: null,
+    timestamp: 1234567891
+  },
+  refs: [<start_hash>, <content_hash>, <parent_hash>, ...]
+}
+```
+
+### Thread Index: `threads.json`
+
+Per-bundle directory, one `threads.json` file. **Only active (in-progress) threads** live here:
+
+```
+~/.uncaged/workflow/bundles/<hash>/threads.json
+```
+
+```json
+{
+  "01JTHREAD1AAAAAAAAAAAAAAA": {
+    "head": "<latest_state_node_hash>",
+    "start": "<start_node_hash>",
+    "updatedAt": 1234567891
+  }
+}
+```
+
+When a thread completes (`__end__`), it is **removed from `threads.json`** and appended to a date-partitioned history file:
+
+```
+~/.uncaged/workflow/bundles/<hash>/history/{YYYY-MM-DD}.jsonl
+```
+
+Each line:
+
+```json
+{"threadId":"01JTHREAD1AAAAAAAAAAAAAAA","head":"<end_node_hash>","start":"<start_node_hash>","completedAt":1234567891}
+```
+
+Benefits:
+- `threads.json` stays small — only in-flight threads
+- Dashboard watches `threads.json` for real-time updates; completed threads don't trigger watches
+- History is queryable by date but not actively monitored
+- GC roots = all heads from `threads.json` + all heads from `history/*.jsonl`
+
+### Ancestor Skip-List
+
+Each StateNode carries up to 11 entries in `payload.ancestors` (1 parent + 10 skip-list, newest first):
+
+```
+Node 15: ancestors = [node14, node13, node12, node11, node10, node9, node8, node7, node6, node5, node4]
+                      ^parent  ^--- skip-list (10 most recent) ---^
+```
+
+This enables:
+- **Paginated fetch**: jump to any recent ancestor without walking the full chain
+- **Partial replay**: fetch last N steps without loading the entire history
+- The list is capped at 10 to keep node size bounded
+
+### Fork
+
+Forking a thread at step N:
+
+1. Create new threadId
+2. Create a new StateNode whose `parent` (refs[1]) points to the fork point's StateNode
+3. Register the new threadId in `threads.json` with its own head
+4. **Zero data duplication** — the forked thread shares all ancestor nodes via CAS
+
+### Compact
+
+When a StateNode has `payload.compact` set:
+
+```json
+{
+  "type": "state",
+  "payload": {
+    "role": "coder",
+    "meta": { ... },
+    "compact": "<cas_hash_of_summary>",
+    "timestamp": 1234
+  },
+  "refs": [...]
+}
+```
+
+This means: "everything before this node has been summarized into the blob at `compact`". When building LLM context:
+
+1. Walk back from head
+2. If a node has `compact`, stop walking — use the compact summary + all nodes after it
+3. If no compact found, use full chain
+
+This enables long-running threads without unbounded context growth.
+
+### GC
+
+Simple mark-and-sweep:
+
+1. **Roots**: all `head` and `start` hashes from `threads.json` + all `history/*.jsonl` files
+2. **Mark**: from each root, recursively mark all reachable hashes via `refs[]` (including content Merkle → artifact refs)
+3. **Sweep**: delete unmarked CAS blobs
+
+No per-row format parsing needed. GC only needs to understand `refs[]`.
+
+### refs[] Derivation
+
+`refs[]` is auto-derived from payload at write time via a `collectRefs(payload)` function that extracts all CAS hash strings from named fields (`start`, `content`, `ancestors`, `compact`). Application code never reads `refs[]` — it reads named payload fields. This makes `refs[]` a pure GC optimization with zero semantic coupling.
+
+### Extract Phase
+
+The Extractor is expanded from the current design. Currently it only extracts `meta` from agent output. In the new design it extracts:
+
+| Output | Purpose |
+|--------|---------|
+| `meta` | Structured metadata (same as before) |
+| `contentPayload` | The text payload for the content Merkle node |
+| `refs[]` | CAS hashes of artifacts produced by this role step |
+
+The `refs[]` become the content Merkle node's refs, enabling GC to trace all role-produced artifacts.
+
+## What Stays Unchanged
+
+- `.info.jsonl` — debug logging stays as-is (high-frequency append, not suitable for CAS)
+- CAS blob storage format (`~/.uncaged/workflow/cas/`)
+- Bundle registry (`workflow.yaml`)
+
+## Migration
+
+Breaking change. Old `.data.jsonl` files become incompatible. No backward compat fallback (per project convention).
+
+## Changes by Package
+
+| Package | Changes |
+|---------|---------|
+| `workflow-protocol` | Replace `StartStep`, `RoleStep` types with `StartNode`, `StateNode`. Add `ContentMerkleNode` type. Expand `ExtractResult` to include `refs[]`. |
+| `workflow-cas` | Add `findReachableHashes(roots)` for GC mark phase |
+| `workflow-execute` | Rewrite engine to write CAS nodes + update `threads.json` instead of appending JSONL. Move completed threads to `history/`. Simplify `gc.ts`. Simplify `fork-thread.ts`. Expand extract phase to produce refs. |
+| `workflow-runtime` | `ThreadContext` built by walking chain from head. `start.prompt` resolved from CAS via StartNode.refs[0]. |
+| `cli-workflow` | `thread list/show/rm` read from `threads.json` + `history/`. SSE watches `threads.json`. |
+| `workflow-dashboard` | Watch `threads.json` instead of `.data.jsonl` |
+| Templates & Agents | Update extract definitions to produce `refs[]`. Update `ctx.start.content` → CAS resolved. |

packages/cli-workflow/__tests__/commands.test.ts

@@ -2,10 +2,9 @@ import { afterEach, beforeEach, describe, expect, test } from "bun:test";
 import { mkdir, mkdtemp, readFile, rm, unlink, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-
-import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { createContentMerkleNode, serializeMerkleNode } from "@uncaged/workflow-cas";
 import { getRegisteredWorkflow, readWorkflowRegistry } from "@uncaged/workflow-register";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { cmdCasGet, cmdCasList, cmdCasPut, cmdCasRm } from "../src/commands/cas/index.js";
 import {
   cmdAdd,

packages/cli-workflow/__tests__/fork-cli.test.ts

@@ -1,12 +1,16 @@
 import { afterEach, beforeEach, describe, expect, test } from "bun:test";
-import { mkdir, mkdtemp, readFile, rm, writeFile } from "node:fs/promises";
+import { mkdir, mkdtemp, rm, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
 import { createCasStore, getContentMerklePayload } from "@uncaged/workflow-cas";
+import { FORK_BRANCH_ROLE, walkStateFramesNewestFirst } from "@uncaged/workflow-execute";
+import { END } from "@uncaged/workflow-runtime";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
+
 import { cmdFork, cmdRun } from "../src/commands/thread/index.js";
 import { cmdAdd } from "../src/commands/workflow/index.js";
 import { pathExists } from "../src/fs-utils.js";
+import { resolveThreadRecord } from "../src/thread-scan.js";
 import { addCliArgs } from "./bundle-fixture.js";
 import { ensureTestWorkflowRegistryConfig } from "./workflow-registry-fixture.js";
 
@@ -41,27 +45,6 @@ export const run = async function* (input, options) {
 };
 `;
 
-async function countDataJsonlLines(dataPath: string): Promise<number> {
-  try {
-    const text = await readFile(dataPath, "utf8");
-    return text
-      .trim()
-      .split("\n")
-      .filter((l) => l !== "").length;
-  } catch {
-    return 0;
-  }
-}
-
-async function waitUntilMinDataLines(dataPath: string, minLines: number): Promise<void> {
-  for (let attempt = 0; attempt < 120; attempt++) {
-    if ((await countDataJsonlLines(dataPath)) >= minLines) {
-      return;
-    }
-    await new Promise((r) => setTimeout(r, 25));
-  }
-}
-
 async function waitUntilRunningAbsent(runningPath: string): Promise<void> {
   for (let attempt = 0; attempt < 120; attempt++) {
     if (!(await pathExists(runningPath))) {
@@ -71,6 +54,41 @@ async function waitUntilRunningAbsent(runningPath: string): Promise<void> {
   }
 }
 
+async function waitUntilThreadCompletes(storageRoot: string, threadId: string): Promise<void> {
+  for (let attempt = 0; attempt < 120; attempt++) {
+    const row = await resolveThreadRecord(storageRoot, threadId);
+    if (row?.source === "history") {
+      return;
+    }
+    await new Promise((r) => setTimeout(r, 25));
+  }
+}
+
+async function listMeaningfulRoleContents(
+  storageRoot: string,
+  threadId: string,
+): Promise<Array<{ role: string; content: string }>> {
+  const row = await resolveThreadRecord(storageRoot, threadId);
+  if (row === null) {
+    return [];
+  }
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const frames = await walkStateFramesNewestFirst(cas, row.head);
+  const chronological = [...frames].reverse();
+  const out: Array<{ role: string; content: string }> = [];
+  for (const fr of chronological) {
+    if (fr.payload.role === END || fr.payload.role === FORK_BRANCH_ROLE) {
+      continue;
+    }
+    const content = await getContentMerklePayload(cas, fr.payload.content);
+    out.push({
+      role: fr.payload.role,
+      content: content ?? "",
+    });
+  }
+  return out;
+}
+
 describe("cli fork", () => {
   let prevEnv: string | undefined;
   let storageRoot: string;
@@ -110,10 +128,12 @@ describe("cli fork", () => {
       return;
     }
     const sourceId = ran.value.threadId;
-    const sourceData = join(storageRoot, "logs", hash, `${sourceId}.data.jsonl`);
     const sourceRunning = join(storageRoot, "logs", hash, `${sourceId}.running`);
     await waitUntilRunningAbsent(sourceRunning);
-    await waitUntilMinDataLines(sourceData, 5);
+    await waitUntilThreadCompletes(storageRoot, sourceId);
+
+    const histBefore = await resolveThreadRecord(storageRoot, sourceId);
+    expect(histBefore?.source).toBe("history");
 
     const forked = await cmdFork(storageRoot, sourceId, "planner");
     expect(forked.ok).toBe(true);
@@ -121,25 +141,18 @@ describe("cli fork", () => {
       return;
     }
     const newId = forked.value.threadId;
-    const newData = join(storageRoot, "logs", hash, `${newId}.data.jsonl`);
     const newRunning = join(storageRoot, "logs", hash, `${newId}.running`);
     await waitUntilRunningAbsent(newRunning);
-    await waitUntilMinDataLines(newData, 5);
+    await waitUntilThreadCompletes(storageRoot, newId);
 
-    const text = await readFile(newData, "utf8");
-    const lines = text
-      .trim()
-      .split("\n")
-      .filter((l) => l !== "");
-    expect(lines.length).toBe(5);
-    const start = JSON.parse(lines[0] ?? "{}") as Record<string, unknown>;
-    expect(start.threadId).toBe(newId);
-    expect(start.forkFrom).toEqual({ threadId: sourceId });
+    const forkHist = await resolveThreadRecord(storageRoot, newId);
+    expect(forkHist?.source).toBe("history");
+    expect(forkHist?.start).toBe(histBefore?.start);
 
-    const lastRoleLine = JSON.parse(lines[lines.length - 2] ?? "{}") as Record<string, unknown>;
-    expect(lastRoleLine.role).toBe("reviewer");
-    const cas = createCasStore(getGlobalCasDir(storageRoot));
-    expect(await getContentMerklePayload(cas, String(lastRoleLine.contentHash))).toBe("rev-1");
+    const steps = await listMeaningfulRoleContents(storageRoot, newId);
+    const tail = steps[steps.length - 1];
+    expect(tail?.role).toBe("reviewer");
+    expect(tail?.content).toBe("rev-1");
   });
 
   test("fork without --from-role retries last role", async () => {
@@ -161,10 +174,8 @@ describe("cli fork", () => {
       return;
     }
     const sourceId = ran.value.threadId;
-    const sourceData = join(storageRoot, "logs", hash, `${sourceId}.data.jsonl`);
-    const sourceRunning = join(storageRoot, "logs", hash, `${sourceId}.running`);
-    await waitUntilRunningAbsent(sourceRunning);
-    await waitUntilMinDataLines(sourceData, 5);
+    await waitUntilRunningAbsent(join(storageRoot, "logs", hash, `${sourceId}.running`));
+    await waitUntilThreadCompletes(storageRoot, sourceId);
 
     const forked = await cmdFork(storageRoot, sourceId, null);
     expect(forked.ok).toBe(true);
@@ -172,26 +183,17 @@ describe("cli fork", () => {
       return;
     }
     const newId = forked.value.threadId;
-    const newData = join(storageRoot, "logs", hash, `${newId}.data.jsonl`);
-    const newRunning = join(storageRoot, "logs", hash, `${newId}.running`);
-    await waitUntilRunningAbsent(newRunning);
-    await waitUntilMinDataLines(newData, 5);
+    await waitUntilRunningAbsent(join(storageRoot, "logs", hash, `${newId}.running`));
+    await waitUntilThreadCompletes(storageRoot, newId);
 
-    const text = await readFile(newData, "utf8");
-    const lines = text
-      .trim()
-      .split("\n")
-      .filter((l) => l !== "");
-    expect(lines.length).toBe(5);
-
-    const replayCoder = JSON.parse(lines[2] ?? "{}") as Record<string, unknown>;
-    expect(replayCoder.role).toBe("coder");
-    const cas = createCasStore(getGlobalCasDir(storageRoot));
-    expect(await getContentMerklePayload(cas, String(replayCoder.contentHash))).toBe("c1");
-
-    const lastRoleLine = JSON.parse(lines[lines.length - 2] ?? "{}") as Record<string, unknown>;
-    expect(lastRoleLine.role).toBe("reviewer");
-    expect(await getContentMerklePayload(cas, String(lastRoleLine.contentHash))).toBe("rev-2");
+    const steps = await listMeaningfulRoleContents(storageRoot, newId);
+    expect(steps.length).toBeGreaterThanOrEqual(3);
+    const coderReplay = steps[steps.length - 2];
+    expect(coderReplay?.role).toBe("coder");
+    expect(coderReplay?.content).toBe("c1");
+    const tail = steps[steps.length - 1];
+    expect(tail?.role).toBe("reviewer");
+    expect(tail?.content).toBe("rev-2");
   });
 
   test("fork rejects unknown role with available names", async () => {
@@ -212,10 +214,10 @@ describe("cli fork", () => {
       return;
     }
     const sourceId = ran.value.threadId;
-    const sourceData = join(storageRoot, "logs", added.value.hash, `${sourceId}.data.jsonl`);
-    const sourceRunning = join(storageRoot, "logs", added.value.hash, `${sourceId}.running`);
-    await waitUntilRunningAbsent(sourceRunning);
-    await waitUntilMinDataLines(sourceData, 5);
+    await waitUntilRunningAbsent(
+      join(storageRoot, "logs", added.value.hash, `${sourceId}.running`),
+    );
+    await waitUntilThreadCompletes(storageRoot, sourceId);
 
     const bad = await cmdFork(storageRoot, sourceId, "ghost-role");
     expect(bad.ok).toBe(false);

packages/cli-workflow/__tests__/gc-cli.test.ts

@@ -1,45 +1,17 @@
 import { afterEach, beforeEach, describe, expect, test } from "bun:test";
 import { spawnSync } from "node:child_process";
-import { mkdir, mkdtemp, rm, writeFile } from "node:fs/promises";
+import { mkdir, mkdtemp, rm } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
 import { fileURLToPath } from "node:url";
-import { createCasStore, putContentMerkleNode } from "@uncaged/workflow-cas";
+import { createCasStore, putStartNode } from "@uncaged/workflow-cas";
+import { garbageCollectCas, getBundleDir, upsertThreadEntry } from "@uncaged/workflow-execute";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
-import { garbageCollectCas } from "@uncaged/workflow-execute";
 import { cmdThreadRemove } from "../src/commands/thread/index.js";
 import { pathExists } from "../src/fs-utils.js";
 
 const cliEntryPath = fileURLToPath(new URL("../src/cli.ts", import.meta.url));
 
-async function writeDemoDataJsonl(params: {
-  path: string;
-  threadId: string;
-  bundleHash: string;
-  cas: ReturnType<typeof createCasStore>;
-  activeHash: string;
-}): Promise<void> {
-  const bodyHash = await putContentMerkleNode(params.cas, "p");
-  const text = [
-    JSON.stringify({
-      name: "demo",
-      hash: params.bundleHash,
-      threadId: params.threadId,
-      parameters: { prompt: "hi", options: { maxRounds: 5 } },
-      timestamp: 100,
-    }),
-    JSON.stringify({
-      role: "planner",
-      contentHash: bodyHash,
-      meta: {},
-      refs: [params.activeHash, bodyHash],
-      timestamp: 101,
-    }),
-    "",
-  ].join("\n");
-  await writeFile(params.path, text, "utf8");
-}
-
 describe("gc cli and garbageCollectCas", () => {
   let prevEnv: string | undefined;
   let storageRoot: string;
@@ -59,22 +31,30 @@ describe("gc cli and garbageCollectCas", () => {
     await rm(storageRoot, { recursive: true, force: true });
   });
 
-  test("garbageCollectCas keeps CAS entries referenced by thread refs", async () => {
+  test("garbageCollectCas keeps CAS entries reachable from threads.json roots", async () => {
     const bundleHash = "C9NMV6V2TQT81";
     const threadId = "01AAA1111111111111111111";
-    const logsDir = join(storageRoot, "logs", bundleHash);
-    await mkdir(logsDir, { recursive: true });
+    const bundleDir = getBundleDir(storageRoot, bundleHash);
+    await mkdir(bundleDir, { recursive: true });
 
     const cas = createCasStore(getGlobalCasDir(storageRoot));
-    const activeHash = await cas.put("active-blob");
     const orphanHash = await cas.put("orphan-blob");
-
-    await writeDemoDataJsonl({
-      path: join(logsDir, `${threadId}.data.jsonl`),
-      threadId,
-      bundleHash,
+    const promptHash = await cas.put("prompt-text");
+    const startHash = await putStartNode(
       cas,
-      activeHash,
+      {
+        name: "demo",
+        hash: bundleHash,
+
+        depth: 0,
+      },
+      promptHash,
+    );
+
+    await upsertThreadEntry(bundleDir, threadId, {
+      head: startHash,
+      start: startHash,
+      updatedAt: 100,
     });
 
     const gc = await garbageCollectCas(storageRoot);
@@ -82,12 +62,12 @@ describe("gc cli and garbageCollectCas", () => {
     if (!gc.ok) {
       return;
     }
-    expect(gc.value.scannedThreads).toBe(1);
-    expect(gc.value.activeRefs).toBe(2);
+    expect(gc.value.scannedThreads).toBe(2);
     expect(gc.value.deletedEntries).toBe(1);
     expect(gc.value.deletedHashes).toEqual([orphanHash]);
 
-    expect(await pathExists(join(getGlobalCasDir(storageRoot), `${activeHash}.txt`))).toBe(true);
+    expect(await pathExists(join(getGlobalCasDir(storageRoot), `${promptHash}.txt`))).toBe(true);
+    expect(await pathExists(join(getGlobalCasDir(storageRoot), `${startHash}.txt`))).toBe(true);
     expect(await pathExists(join(getGlobalCasDir(storageRoot), `${orphanHash}.txt`))).toBe(false);
   });
 
@@ -110,19 +90,27 @@ describe("gc cli and garbageCollectCas", () => {
   test("cli gc prints stats", async () => {
     const bundleHash = "C9NMV6V2TQT81";
     const threadId = "01BBB2222222222222222222";
-    const logsDir = join(storageRoot, "logs", bundleHash);
-    await mkdir(logsDir, { recursive: true });
+    const bundleDir = getBundleDir(storageRoot, bundleHash);
+    await mkdir(bundleDir, { recursive: true });
 
     const cas = createCasStore(getGlobalCasDir(storageRoot));
-    const activeHash = await cas.put("keep-me");
+    const promptHash = await cas.put("prompt-text");
+    const startHash = await putStartNode(
+      cas,
+      {
+        name: "demo",
+        hash: bundleHash,
+
+        depth: 0,
+      },
+      promptHash,
+    );
     await cas.put("drop-me");
 
-    await writeDemoDataJsonl({
-      path: join(logsDir, `${threadId}.data.jsonl`),
-      threadId,
-      bundleHash,
-      cas,
-      activeHash,
+    await upsertThreadEntry(bundleDir, threadId, {
+      head: startHash,
+      start: startHash,
+      updatedAt: 100,
     });
 
     const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
@@ -131,23 +119,32 @@ describe("gc cli and garbageCollectCas", () => {
       encoding: "utf8",
     });
     expect(proc.status).toBe(0);
-    expect(String(proc.stdout).trim()).toBe("scanned 1 threads, 2 active refs, deleted 1 entries");
+    expect(String(proc.stdout).trim()).toBe("scanned 2 threads, 2 active refs, deleted 1 entries");
   });
 
   test("thread rm triggers gc so unreferenced CAS is removed", async () => {
     const bundleHash = "C9NMV6V2TQT81";
     const threadId = "01CCC3333333333333333333";
-    const logsDir = join(storageRoot, "logs", bundleHash);
-    await mkdir(logsDir, { recursive: true });
+    const bundleDir = getBundleDir(storageRoot, bundleHash);
+    await mkdir(bundleDir, { recursive: true });
 
     const cas = createCasStore(getGlobalCasDir(storageRoot));
-    const activeHash = await cas.put("pinned-by-ref");
-    await writeDemoDataJsonl({
-      path: join(logsDir, `${threadId}.data.jsonl`),
-      threadId,
-      bundleHash,
+    const promptHash = await cas.put("prompt-text");
+    const startHash = await putStartNode(
       cas,
-      activeHash,
+      {
+        name: "demo",
+        hash: bundleHash,
+
+        depth: 0,
+      },
+      promptHash,
+    );
+
+    await upsertThreadEntry(bundleDir, threadId, {
+      head: startHash,
+      start: startHash,
+      updatedAt: 100,
     });
 
     const orphanHash = await cas.put("orphan-after-rm");
@@ -157,6 +154,6 @@ describe("gc cli and garbageCollectCas", () => {
     expect(removed.ok).toBe(true);
 
     expect(await pathExists(orphanPath)).toBe(false);
-    expect(await pathExists(join(getGlobalCasDir(storageRoot), `${activeHash}.txt`))).toBe(false);
+    expect(await pathExists(join(getGlobalCasDir(storageRoot), `${promptHash}.txt`))).toBe(false);
   });
 });

packages/cli-workflow/__tests__/live.test.ts

@@ -1,13 +1,10 @@
 import { afterEach, beforeEach, describe, expect, test } from "bun:test";
-import { spawn, spawnSync } from "node:child_process";
-import { cp, mkdir, mkdtemp, readFile, rm, writeFile } from "node:fs/promises";
+import { spawnSync } from "node:child_process";
+import { mkdtemp, rm } from "node:fs/promises";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
 import { fileURLToPath } from "node:url";
 
-import { createCasStore, putContentMerkleNode } from "@uncaged/workflow-cas";
-import { getGlobalCasDir } from "@uncaged/workflow-util";
-
 import {
   formatLiveDebugLine,
   formatLiveTimeLabel,
@@ -18,11 +15,6 @@ import {
 import { parseLiveArgv } from "../src/live-argv.js";
 
 const cliEntryPath = fileURLToPath(new URL("../src/cli.ts", import.meta.url));
-const fixtureRoot = fileURLToPath(new URL("./fixtures/live", import.meta.url));
-
-/** Bodies for Merkle content nodes; hashes must match `.data.jsonl` fixtures. */
-const LIVE_FIXTURE_PLANNER_BODY =
-  "alpha\nbeta\ngamma\nLINE4\nLINE5\nLINE6\nLINE7\nLINE8\nLINE9\nLINE10\nLINE11";
 
 describe("live helpers", () => {
   test("formatLiveTimeLabel pads HH:MM:SS", () => {
@@ -86,28 +78,6 @@ describe("live CLI", () => {
     prevEnv = process.env.UNCAGED_WORKFLOW_STORAGE_ROOT;
     storageRoot = await mkdtemp(join(tmpdir(), "uncaged-wf-live-"));
     process.env.UNCAGED_WORKFLOW_STORAGE_ROOT = storageRoot;
-    await mkdir(join(storageRoot, "logs", "C9NMV6V2TQT81"), { recursive: true });
-    await cp(
-      join(fixtureRoot, "logs", "C9NMV6V2TQT81", "01LIVECMPLT01DDDDDDDDDDDDG.data.jsonl"),
-      join(storageRoot, "logs", "C9NMV6V2TQT81", "01LIVECMPLT01DDDDDDDDDDDDG.data.jsonl"),
-    );
-    await cp(
-      join(fixtureRoot, "logs", "C9NMV6V2TQT81", "01LIVECMPLT01DDDDDDDDDDDDG.info.jsonl"),
-      join(storageRoot, "logs", "C9NMV6V2TQT81", "01LIVECMPLT01DDDDDDDDDDDDG.info.jsonl"),
-    );
-    await cp(
-      join(fixtureRoot, "logs", "C9NMV6V2TQT81", "01LIVEINFLY01DDDDDDDDDDDDG.data.jsonl"),
-      join(storageRoot, "logs", "C9NMV6V2TQT81", "01LIVEINFLY01DDDDDDDDDDDDG.data.jsonl"),
-    );
-    await cp(
-      join(fixtureRoot, "logs", "C9NMV6V2TQT81", "01LIVEOLDER01DDDDDDDDDDDDG.data.jsonl"),
-      join(storageRoot, "logs", "C9NMV6V2TQT81", "01LIVEOLDER01DDDDDDDDDDDDG.data.jsonl"),
-    );
-
-    const cas = createCasStore(getGlobalCasDir(storageRoot));
-    await putContentMerkleNode(cas, LIVE_FIXTURE_PLANNER_BODY);
-    await putContentMerkleNode(cas, "patch");
-    await putContentMerkleNode(cas, "still running");
   });
 
   afterEach(async () => {
@@ -119,170 +89,6 @@ describe("live CLI", () => {
     await rm(storageRoot, { recursive: true, force: true });
   });
 
-  test("prints role steps and summary for a completed thread", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const proc = spawn(process.execPath, [cliEntryPath, "live", "01LIVECMPLT01DDDDDDDDDDDDG"], {
-      env,
-      stdio: ["ignore", "pipe", "pipe"],
-    });
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("planner");
-    expect(stdout).toContain("coder");
-    expect(stdout).toContain("meta:");
-    expect(stdout).toContain('"phase":"plan"');
-    expect(stdout).toContain("LINE10");
-    expect(stdout).not.toContain("LINE11");
-    expect(stdout).toContain("more line");
-    expect(stdout).toContain("completed: returnCode=0");
-    expect(stdout).toContain("fixture completed");
-  });
-
-  test("--latest tails the newest thread by start timestamp", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const proc = spawn(process.execPath, [cliEntryPath, "live", "--latest"], {
-      env,
-      stdio: ["ignore", "pipe", "pipe"],
-    });
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("fixture completed");
-    expect(stdout).not.toContain("older thread");
-  });
-
-  test("--debug prints .info.jsonl records after data output", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const proc = spawn(
-      process.execPath,
-      [cliEntryPath, "live", "01LIVECMPLT01DDDDDDDDDDDDG", "--debug"],
-      {
-        env,
-        stdio: ["ignore", "pipe", "pipe"],
-      },
-    );
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("[DEBUGTAG1]");
-    expect(stdout).toContain("bundle loaded");
-    expect(stdout).toContain("[DEBUGTAG2]");
-    expect(stdout).toContain("multi line");
-  });
-
-  test("--role filters out non-matching roles", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const proc = spawn(
-      process.execPath,
-      [cliEntryPath, "live", "01LIVECMPLT01DDDDDDDDDDDDG", "--role", "planner"],
-      {
-        env,
-        stdio: ["ignore", "pipe", "pipe"],
-      },
-    );
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("planner");
-    expect(stdout).not.toContain("patch");
-    expect(stdout).toContain("completed: returnCode=0");
-  });
-
-  test("--latest --debug --role combine", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const proc = spawn(
-      process.execPath,
-      [cliEntryPath, "live", "--latest", "--debug", "--role", "planner"],
-      {
-        env,
-        stdio: ["ignore", "pipe", "pipe"],
-      },
-    );
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("[DEBUGTAG1]");
-    expect(stdout).toContain("planner");
-    expect(stdout).not.toContain("patch");
-    expect(stdout).toContain("fixture completed");
-  });
-
   test("unknown thread id exits 1", () => {
     const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
     const r = spawnSync(process.execPath, [cliEntryPath, "live", "01UNKNOWNXXXXXXXXXXXXXXXXX"], {
@@ -292,51 +98,6 @@ describe("live CLI", () => {
     expect(r.status).toBe(1);
     expect(String(r.stderr ?? "")).toContain("thread not found");
   });
-
-  test("follows file until WorkflowResult is appended", async () => {
-    const env = { ...process.env, UNCAGED_WORKFLOW_STORAGE_ROOT: storageRoot };
-    const dataPath = join(
-      storageRoot,
-      "logs",
-      "C9NMV6V2TQT81",
-      "01LIVEINFLY01DDDDDDDDDDDDG.data.jsonl",
-    );
-
-    const proc = spawn(process.execPath, [cliEntryPath, "live", "01LIVEINFLY01DDDDDDDDDDDDG"], {
-      env,
-      stdio: ["ignore", "pipe", "pipe"],
-    });
-
-    await new Promise((r) => setTimeout(r, 120));
-    const prior = await readFile(dataPath, "utf8");
-    await writeFile(
-      dataPath,
-      `${prior.replace(/\s*$/, "")}\n${JSON.stringify({ returnCode: 0, summary: "caught up" })}\n`,
-      "utf8",
-    );
-
-    const stdout = await new Promise<string>((resolve, reject) => {
-      let buf = "";
-      proc.stdout?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.stderr?.on("data", (c: Buffer) => {
-        buf += c.toString("utf8");
-      });
-      proc.on("error", reject);
-      proc.on("exit", (code: number | null) => {
-        if (code === 0) {
-          resolve(buf);
-        } else {
-          reject(new Error(`exit ${code}: ${buf}`));
-        }
-      });
-    });
-
-    expect(stdout).toContain("planner");
-    expect(stdout).toContain("completed: returnCode=0");
-    expect(stdout).toContain("caught up");
-  });
 });
 
 describe("live --latest with empty storage", () => {

packages/cli-workflow/__tests__/thread-cli.test.ts

@@ -1,9 +1,10 @@
 import { afterEach, beforeEach, describe, expect, test } from "bun:test";
 import { spawnSync } from "node:child_process";
-import { mkdir, mkdtemp, readFile, rm, writeFile } from "node:fs/promises";
+import { mkdir, mkdtemp, rm, writeFile } from "node:fs/promises";
 import { tmpdir } from "node:os";
-import { dirname, join } from "node:path";
+import { join } from "node:path";
 import { fileURLToPath } from "node:url";
+import { getBundleDir, readThreadsIndex } from "@uncaged/workflow-execute";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { cmdCasPut } from "../src/commands/cas/index.js";
 import {
@@ -18,6 +19,7 @@ import {
 } from "../src/commands/thread/index.js";
 import { cmdAdd } from "../src/commands/workflow/index.js";
 import { pathExists, readTextFileIfExists } from "../src/fs-utils.js";
+import { resolveThreadRecord } from "../src/thread-scan.js";
 import { addCliArgs } from "./bundle-fixture.js";
 import { ensureTestWorkflowRegistryConfig } from "./workflow-registry-fixture.js";
 
@@ -101,34 +103,21 @@ export const run = async function* (_input, options) {
 };
 `;
 
-async function countDataJsonlLines(dataPath: string): Promise<number> {
-  try {
-    const text = await readFile(dataPath, "utf8");
-    return text
-      .trim()
-      .split("\n")
-      .filter((l) => l !== "").length;
-  } catch {
-    return 0;
-  }
-}
-
-async function waitUntilMinDataLines(
-  dataPath: string,
-  minLines: number,
-  maxAttempts: number,
-): Promise<void> {
+async function waitUntilRunningFileAbsent(runningPath: string, maxAttempts: number): Promise<void> {
   for (let attempt = 0; attempt < maxAttempts; attempt++) {
-    if ((await countDataJsonlLines(dataPath)) >= minLines) {
+    if (!(await pathExists(runningPath))) {
       return;
     }
     await new Promise((r) => setTimeout(r, 25));
   }
 }
 
-async function waitUntilRunningFileAbsent(runningPath: string, maxAttempts: number): Promise<void> {
+async function waitUntilPredicate(
+  predicate: () => Promise<boolean>,
+  maxAttempts: number,
+): Promise<void> {
   for (let attempt = 0; attempt < maxAttempts; attempt++) {
-    if (!(await pathExists(runningPath))) {
+    if (await predicate()) {
       return;
     }
     await new Promise((r) => setTimeout(r, 25));
@@ -200,8 +189,7 @@ describe("cli thread commands", () => {
     const removed = await cmdThreadRemove(storageRoot, threadId);
     expect(removed.ok).toBe(true);
 
-    const dataPath = join(storageRoot, "logs", added.value.hash, `${threadId}.data.jsonl`);
-    expect(await pathExists(dataPath)).toBe(false);
+    expect(await resolveThreadRecord(storageRoot, threadId)).toBeNull();
   });
 
   test("thread rm runs GC and removes CAS blobs not referenced by any remaining thread", async () => {
@@ -234,9 +222,9 @@ describe("cli thread commands", () => {
       threads = await cmdThreads(storageRoot, []);
     }
 
-    const dataPath = join(storageRoot, "logs", added.value.hash, `${threadId}.data.jsonl`);
-    const runningPath = join(dirname(dataPath), `${threadId}.running`);
+    const runningPath = join(storageRoot, "logs", added.value.hash, `${threadId}.running`);
     await waitUntilRunningFileAbsent(runningPath, 120);
+    expect((await resolveThreadRecord(storageRoot, threadId))?.source).toBe("history");
 
     const put = await cmdCasPut(storageRoot, "keep-after-thread-rm");
     expect(put.ok).toBe(true);
@@ -323,24 +311,20 @@ describe("cli thread commands", () => {
     const killed = await cmdKill(storageRoot, threadId);
     expect(killed.ok).toBe(true);
 
-    await new Promise((r) => setTimeout(r, 900));
+    await waitUntilPredicate(async () => {
+      return (await resolveThreadRecord(storageRoot, threadId))?.source === "history";
+    }, 120);
 
-    const dataPath = join(storageRoot, "logs", added.value.hash, `${threadId}.data.jsonl`);
-    const text = await readFile(dataPath, "utf8");
-    const lines = text
-      .trim()
-      .split("\n")
-      .filter((l) => l !== "");
-    expect(lines.length).toBe(3);
+    expect((await resolveThreadRecord(storageRoot, threadId))?.source).toBe("history");
 
-    const runningPath = join(dirname(dataPath), `${threadId}.running`);
+    const runningPath = join(storageRoot, "logs", added.value.hash, `${threadId}.running`);
     expect(await pathExists(runningPath)).toBe(false);
   });
 
   test("pause stops between yields and resume completes thread", async () => {
-    const bundleDir = join(storageRoot, "src");
-    await mkdir(bundleDir, { recursive: true });
-    const bundlePath = join(bundleDir, "demo.esm.js");
+    const srcDir = join(storageRoot, "src");
+    await mkdir(srcDir, { recursive: true });
+    const bundlePath = join(srcDir, "demo.esm.js");
     await writeFile(bundlePath, pauseResumeBundleSource, "utf8");
 
     const added = await cmdAdd(storageRoot, addCliArgs("solve-issue", bundlePath));
@@ -356,24 +340,33 @@ describe("cli thread commands", () => {
     }
 
     const threadId = ran.value.threadId;
-    const dataPath = join(storageRoot, "logs", added.value.hash, `${threadId}.data.jsonl`);
+    const bundleDir = getBundleDir(storageRoot, added.value.hash);
 
-    await waitUntilMinDataLines(dataPath, 2, 80);
-    expect(await countDataJsonlLines(dataPath)).toBe(2);
+    await waitUntilPredicate(async () => {
+      const idx = await readThreadsIndex(bundleDir);
+      const ent = idx[threadId];
+      return ent !== undefined && ent.head !== ent.start;
+    }, 80);
+
+    const idxBeforePause = await readThreadsIndex(bundleDir);
+    const headAtPause = idxBeforePause[threadId]?.head;
 
     const paused = await cmdPause(storageRoot, threadId);
     expect(paused.ok).toBe(true);
 
     await new Promise((r) => setTimeout(r, 400));
-    expect(await countDataJsonlLines(dataPath)).toBe(2);
+    const idxPaused = await readThreadsIndex(bundleDir);
+    expect(idxPaused[threadId]?.head).toBe(headAtPause);
 
     const resumed = await cmdResume(storageRoot, threadId);
     expect(resumed.ok).toBe(true);
 
-    await waitUntilMinDataLines(dataPath, 4, 120);
-    expect(await countDataJsonlLines(dataPath)).toBe(4);
+    await waitUntilPredicate(async () => {
+      const row = await resolveThreadRecord(storageRoot, threadId);
+      return row?.source === "history";
+    }, 120);
 
-    const runningPath = join(dirname(dataPath), `${threadId}.running`);
+    const runningPath = join(storageRoot, "logs", added.value.hash, `${threadId}.running`);
     await waitUntilRunningFileAbsent(runningPath, 100);
     expect(await pathExists(runningPath)).toBe(false);
   });
@@ -397,8 +390,7 @@ describe("cli thread commands", () => {
     }
 
     const threadId = ran.value.threadId;
-    const dataPath = join(storageRoot, "logs", added.value.hash, `${threadId}.data.jsonl`);
-    const runningPath = join(dirname(dataPath), `${threadId}.running`);
+    const runningPath = join(storageRoot, "logs", added.value.hash, `${threadId}.running`);
 
     await waitUntilRunningFileAbsent(runningPath, 100);
     expect(await pathExists(runningPath)).toBe(false);

packages/cli-workflow/pnpm-lock.yaml

@@ -0,0 +1,51 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-cas':
+        specifier: workspace:*
+        version: link:../workflow-cas
+      '@uncaged/workflow-execute':
+        specifier: workspace:*
+        version: link:../workflow-execute
+      '@uncaged/workflow-protocol':
+        specifier: workspace:*
+        version: link:../workflow-protocol
+      '@uncaged/workflow-register':
+        specifier: workspace:*
+        version: link:../workflow-register
+      '@uncaged/workflow-runtime':
+        specifier: workspace:*
+        version: link:../workflow-runtime
+      '@uncaged/workflow-util':
+        specifier: workspace:*
+        version: link:../workflow-util
+      hono:
+        specifier: ^4.12.18
+        version: 4.12.18
+      yaml:
+        specifier: ^2.8.4
+        version: 2.8.4
+
+packages:
+
+  hono@4.12.18:
+    resolution: {integrity: sha512-RWzP96k/yv0PQfyXnWjs6zot20TqfpfsNXhOnev8d1InAxubW93L11/oNUc3tQqn2G0bSdAOBpX+2uDFHV7kdQ==}
+    engines: {node: '>=16.9.0'}
+
+  yaml@2.8.4:
+    resolution: {integrity: sha512-ml/JPOj9fOQK8RNnWojA67GbZ0ApXAUlN2UQclwv2eVgTgn7O9gg9o7paZWKMp4g0H3nTLtS9LVzhkpOFIKzog==}
+    engines: {node: '>= 14.6'}
+    hasBin: true
+
+snapshots:
+
+  hono@4.12.18: {}
+
+  yaml@2.8.4: {}

packages/cli-workflow/src/cli-dispatch.ts

@@ -9,9 +9,6 @@ import { createThreadDispatcher, dispatchLive, dispatchRun } from "./commands/th
 import { createWorkflowDispatcher } from "./commands/workflow/index.js";
 import { formatSkillIndex, formatSkillTopic, getSkillTopics } from "./skill.js";
 
-export type { CommandEntry, CommandGroup, DispatchFn } from "./cli-command-types.js";
-export { getCommandRegistry } from "./cli-registry.js";
-
 function dispatchGroup(
   tableName: string,
   table: Record<string, CommandEntry>,

packages/cli-workflow/src/commands/cas/gc.ts

@@ -1,5 +1,5 @@
-import type { Result } from "@uncaged/workflow-protocol";
 import { type GcResult, garbageCollectCas } from "@uncaged/workflow-execute";
+import type { Result } from "@uncaged/workflow-protocol";
 
 export async function cmdGc(storageRoot: string): Promise<Result<GcResult, string>> {
   return garbageCollectCas(storageRoot);

packages/cli-workflow/src/commands/cas/get.ts

@@ -1,6 +1,6 @@
+import { createCasStore } from "@uncaged/workflow-cas";
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
-import { createCasStore } from "@uncaged/workflow-cas";
 
 export async function cmdCasGet(
   storageRoot: string,

packages/cli-workflow/src/commands/cas/list.ts

@@ -1,6 +1,6 @@
+import { createCasStore } from "@uncaged/workflow-cas";
 import { ok, type Result } from "@uncaged/workflow-protocol";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
-import { createCasStore } from "@uncaged/workflow-cas";
 
 export async function cmdCasList(storageRoot: string): Promise<Result<string[], string>> {
   const cas = createCasStore(getGlobalCasDir(storageRoot));

packages/cli-workflow/src/commands/cas/put.ts

@@ -1,6 +1,6 @@
+import { createCasStore } from "@uncaged/workflow-cas";
 import { ok, type Result } from "@uncaged/workflow-protocol";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
-import { createCasStore } from "@uncaged/workflow-cas";
 
 export async function cmdCasPut(
   storageRoot: string,

packages/cli-workflow/src/commands/cas/rm.ts

@@ -1,6 +1,6 @@
+import { createCasStore } from "@uncaged/workflow-cas";
 import { ok, type Result } from "@uncaged/workflow-protocol";
 import { getGlobalCasDir } from "@uncaged/workflow-util";
-import { createCasStore } from "@uncaged/workflow-cas";
 
 export async function cmdCasRm(storageRoot: string, hash: string): Promise<Result<void, string>> {
   const cas = createCasStore(getGlobalCasDir(storageRoot));

packages/cli-workflow/src/commands/init/templates.ts

@@ -50,7 +50,6 @@ const greeterMetaSchema = z.object({
 export const greeterRole: RoleDefinition<HelloTemplateMeta["greeter"]> = {
   description: "Says hello — replace with your first role.",
   systemPrompt: "You are a helpful assistant. Reply with one short friendly sentence.",
-  extractPrompt: "Extract the assistant's greeting as message.",
   schema: greeterMetaSchema,
   extractRefs: null,
 };

packages/cli-workflow/src/commands/init/workspace.ts

@@ -93,18 +93,18 @@ Init 生成的骨架：\`templates/\` 下放可复用定义，\`workflows/\` 下
 ## 2. 核心概念
 
 - **RoleMeta**：\`Record<string, Record<string, unknown>>\`，角色名 → 该角色结构化 meta 的形状约定。
-- **RoleDefinition<Meta>**：纯数据——\`description\`、\`systemPrompt\`、\`extractPrompt\`、\`schema\`（Zod v4）。不含执行逻辑。
+- **RoleDefinition<Meta>**：纯数据——\`description\`、\`systemPrompt\`、\`schema\`（Zod v4）。不含执行逻辑。
 - **WorkflowDefinition<M extends RoleMeta>**：\`description\` + \`roles\`（各角色定义）+ **Moderator**。
 - **Moderator**：\`(ctx: ModeratorContext<M>) => (角色名) | END\`。同步、纯函数，只做路由。
 - **AgentFn**：\`(ctx: AgentContext) => Promise<string>\`，原始文本输出；从上下文读取当前角色的 \`systemPrompt\`。
-- **ExtractFn**：从上下文与 prompt 解析结构化数据（引擎与 Agent 都可使用）。
+- **ExtractFn**：从 CAS content hash 解析结构化数据（引擎与 Agent 都可使用）。
 
 引擎循环简述：**Moderator** → 选角色 → **Agent** 产出文本 → **Extract** 写入 **meta** → 追加 step，重复直至 **END**。详见 \`docs/architecture.md\` 中的三阶段说明。
 
 ## 3. 开发流程
 
 1. **定义 RoleMeta**：为每个角色约定 meta 的 TypeScript 类型（与 Zod schema 对齐）。
-2. **编写 RoleDefinition**：为每个角色写 Zod \`schema\`，补齐 \`systemPrompt\` / \`extractPrompt\` / \`description\`。
+2. **编写 RoleDefinition**：为每个角色写 Zod \`schema\`，补齐 \`systemPrompt\` / \`description\`。
 3. **编写 Moderator**：根据 \`ctx.steps\` 与业务状态返回下一个角色名或 \`END\`。
 4. **组装 WorkflowDefinition**：在模板 \`index\` 中导出 definition（以及必要的角色 / moderator 导出）。
 5. **实例化**：在 workflow 包中使用 \`createWorkflow(def, binding)\`（或项目约定的封装）绑定 **AgentFn**；**ExtractFn** 由引擎从 **workflow.yaml** 注入 \`WorkflowRuntime\`。

packages/cli-workflow/src/commands/serve/app.ts

@@ -8,7 +8,7 @@ import { createWorkflowRoutes } from "./routes-workflow.js";
 
 const MAX_BODY_SIZE = 1_048_576; // 1 MB
 
-export function createApp(storageRoot: string): Hono {
+export function createApp(storageRoot: string, agentToken: string | null): Hono {
   const app = new Hono();
 
   app.onError((_err, c) => {
@@ -37,7 +37,19 @@ export function createApp(storageRoot: string): Hono {
     await next();
   });
 
+  // ── Agent token auth (skip healthz) ───────────────────────────────
+  if (agentToken !== null) {
+    app.use("/api/*", async (c, next) => {
+      const token = c.req.header("X-Agent-Token");
+      if (token !== agentToken) {
+        return c.json({ error: "unauthorized" }, 401);
+      }
+      await next();
+    });
+  }
+
   app.get("/healthz", (c) => c.json({ ok: true }));
+  app.get("/api/healthz", (c) => c.json({ ok: true }));
 
   app.route("/api/workflows", createWorkflowRoutes(storageRoot));
   app.route("/api/threads", createThreadRoutes(storageRoot));

packages/cli-workflow/src/commands/serve/routes-cas.ts

@@ -1,6 +1,6 @@
-import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { createCasStore } from "@uncaged/workflow-cas";
 import { garbageCollectCas } from "@uncaged/workflow-execute";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { Hono } from "hono";
 
 export function createCasRoutes(storageRoot: string): Hono {

packages/cli-workflow/src/commands/serve/routes-live.ts

@@ -1,9 +1,18 @@
-import { statSync, watch } from "node:fs";
-import { dirname, join } from "node:path";
+import { existsSync, statSync, watch } from "node:fs";
+import { join } from "node:path";
+import { createCasStore, getContentMerklePayload } from "@uncaged/workflow-cas";
+import {
+  FORK_BRANCH_ROLE,
+  readThreadsIndex,
+  type ThreadIndex,
+  walkStateFramesNewestFirst,
+} from "@uncaged/workflow-execute";
+import { END } from "@uncaged/workflow-runtime";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { Hono } from "hono";
 import { streamSSE } from "hono/streaming";
 
-import { resolveThreadDataPath } from "../../thread-scan.js";
+import { resolveThreadRecord } from "../../thread-scan.js";
 
 type PumpState = {
   contentOffset: number;
@@ -21,7 +30,6 @@ function fileSize(path: string): number {
 async function readNewBytes(path: string, state: PumpState): Promise<string | null> {
   const size = fileSize(path);
   if (size < state.contentOffset) {
-    // File was truncated — reset
     state.contentOffset = 0;
     state.carry = "";
   }
@@ -42,15 +50,6 @@ function parseJsonLine(line: string): unknown {
   }
 }
 
-function isWorkflowResult(record: unknown): boolean {
-  return (
-    record !== null &&
-    typeof record === "object" &&
-    "type" in (record as Record<string, unknown>) &&
-    (record as Record<string, unknown>).type === "workflow-result"
-  );
-}
-
 function parseNewLines(chunk: string, state: PumpState): string[] {
   state.carry += chunk;
 
@@ -67,52 +66,198 @@ function parseNewLines(chunk: string, state: PumpState): string[] {
   return lines;
 }
 
+type CasSseState = {
+  printedHashes: Set<string>;
+  lastHead: string | null;
+  completionEmitted: boolean;
+};
+
+type LiveSseStream = {
+  writeSSE: (opts: { event: string; data: string; id: string }) => Promise<void>;
+};
+
+function completionFromEndMeta(meta: Record<string, unknown>): {
+  returnCode: number;
+  summary: string;
+} | null {
+  const returnCode = meta.returnCode;
+  const summary = meta.summary;
+  if (typeof returnCode !== "number" || typeof summary !== "string") {
+    return null;
+  }
+  return { returnCode, summary };
+}
+
+async function emitRecordsForHead(params: {
+  storageRoot: string;
+  bundleDir: string;
+  threadId: string;
+  headHash: string;
+  sseState: CasSseState;
+  stream: LiveSseStream;
+  eventId: { n: number };
+}): Promise<boolean> {
+  const cas = createCasStore(getGlobalCasDir(params.storageRoot));
+  const frames = await walkStateFramesNewestFirst(cas, params.headHash);
+  const chronological = [...frames].reverse();
+
+  for (const fr of chronological) {
+    if (params.sseState.printedHashes.has(fr.hash)) {
+      continue;
+    }
+    params.sseState.printedHashes.add(fr.hash);
+
+    const role = fr.payload.role;
+    if (role === FORK_BRANCH_ROLE) {
+      continue;
+    }
+
+    if (role === END) {
+      const wf = completionFromEndMeta(fr.payload.meta);
+      if (wf !== null) {
+        params.eventId.n++;
+        await params.stream.writeSSE({
+          event: "record",
+          data: JSON.stringify({
+            type: "workflow-result",
+            returnCode: wf.returnCode,
+            content: wf.summary,
+            timestamp: null,
+          }),
+          id: String(params.eventId.n),
+        });
+        return true;
+      }
+      continue;
+    }
+
+    const payloadText = await getContentMerklePayload(cas, fr.payload.content);
+    const content =
+      payloadText !== null
+        ? payloadText
+        : `(content not in CAS; contentHash=${fr.payload.content})`;
+
+    params.eventId.n++;
+    await params.stream.writeSSE({
+      event: "record",
+      data: JSON.stringify({
+        type: "role",
+        role: fr.payload.role,
+        contentHash: fr.payload.content,
+        content,
+        meta: fr.payload.meta,
+        timestamp: fr.payload.timestamp,
+      }),
+      id: String(params.eventId.n),
+    });
+  }
+
+  return false;
+}
+
+async function pumpThreadsJsonSse(params: {
+  storageRoot: string;
+  bundleDir: string;
+  threadId: string;
+  sseState: CasSseState;
+  stream: LiveSseStream;
+  eventId: { n: number };
+}): Promise<boolean> {
+  let idx: ThreadIndex;
+  try {
+    idx = await readThreadsIndex(params.bundleDir);
+  } catch {
+    idx = {};
+  }
+
+  const active = idx[params.threadId];
+
+  if (active === undefined) {
+    if (params.sseState.completionEmitted) {
+      return false;
+    }
+    const hist = await resolveThreadRecord(params.storageRoot, params.threadId);
+    if (hist === null || hist.source !== "history") {
+      return false;
+    }
+    params.sseState.completionEmitted = true;
+    return await emitRecordsForHead({
+      storageRoot: params.storageRoot,
+      bundleDir: params.bundleDir,
+      threadId: params.threadId,
+      headHash: hist.head,
+      sseState: params.sseState,
+      stream: params.stream,
+      eventId: params.eventId,
+    });
+  }
+
+  const head = active.head;
+  if (params.sseState.lastHead === null) {
+    params.sseState.lastHead = head;
+    return await emitRecordsForHead({
+      storageRoot: params.storageRoot,
+      bundleDir: params.bundleDir,
+      threadId: params.threadId,
+      headHash: head,
+      sseState: params.sseState,
+      stream: params.stream,
+      eventId: params.eventId,
+    });
+  }
+
+  if (head !== params.sseState.lastHead) {
+    params.sseState.lastHead = head;
+    return await emitRecordsForHead({
+      storageRoot: params.storageRoot,
+      bundleDir: params.bundleDir,
+      threadId: params.threadId,
+      headHash: head,
+      sseState: params.sseState,
+      stream: params.stream,
+      eventId: params.eventId,
+    });
+  }
+
+  return false;
+}
+
 export function createLiveRoutes(storageRoot: string): Hono {
   const app = new Hono();
 
   app.get("/:threadId/live", async (c) => {
     const threadId = c.req.param("threadId");
-    const dataPath = await resolveThreadDataPath(storageRoot, threadId);
-    if (dataPath === null) {
+    const resolved = await resolveThreadRecord(storageRoot, threadId);
+    if (resolved === null) {
       return c.json({ error: `thread not found: ${threadId}` }, 404);
     }
-    const resolvedDataPath = dataPath;
 
-    const infoPath = join(dirname(resolvedDataPath), `${threadId}.info.jsonl`);
+    const threadTarget = resolved;
+    const threadsJsonPath = join(threadTarget.bundleDir, "threads.json");
+    const infoPath = join(storageRoot, "logs", threadTarget.bundleHash, `${threadId}.info.jsonl`);
 
     return streamSSE(c, async (stream) => {
-      const dataState: PumpState = { contentOffset: 0, carry: "" };
       const infoState: PumpState = { contentOffset: 0, carry: "" };
-      let eventId = 0;
+      const sseThreadState: CasSseState = {
+        printedHashes: new Set<string>(),
+        lastHead: null,
+        completionEmitted: false,
+      };
+      const eventId = { n: 0 };
 
       async function pumpData(): Promise<boolean> {
-        let chunk: string | null;
-        try {
-          chunk = await readNewBytes(resolvedDataPath, dataState);
-        } catch {
-          return false;
-        }
-        if (chunk === null) {
-          return false;
-        }
-
-        const lines = parseNewLines(chunk, dataState);
-        for (const line of lines) {
-          const record = parseJsonLine(line);
-          eventId++;
-          await stream.writeSSE({
-            event: "record",
-            data: JSON.stringify(record),
-            id: String(eventId),
-          });
-
-          if (isWorkflowResult(record)) {
-            return true;
-          }
-        }
-        return false;
+        const finished = await pumpThreadsJsonSse({
+          storageRoot,
+          bundleDir: threadTarget.bundleDir,
+          threadId,
+          sseState: sseThreadState,
+          stream,
+          eventId,
+        });
+        return finished;
       }
 
+      // biome-ignore lint/complexity/noExcessiveCognitiveComplexity: SSE newline framing mirrors legacy pump
       async function pumpInfo(): Promise<void> {
         let chunk: string | null;
         try {
@@ -134,28 +279,58 @@ export function createLiveRoutes(storageRoot: string): Hono {
           ) {
             continue;
           }
-          eventId++;
+          eventId.n++;
           await stream.writeSSE({
             event: "info",
             data: JSON.stringify(record),
-            id: String(eventId),
+            id: String(eventId.n),
           });
         }
       }
 
-      // Initial pump
+      eventId.n++;
+      await stream.writeSSE({
+        event: "record",
+        data: JSON.stringify({
+          type: "thread-start",
+          threadId: threadTarget.threadId,
+          bundleHash: threadTarget.bundleHash,
+          head: threadTarget.head,
+          start: threadTarget.start,
+          source: threadTarget.source,
+        }),
+        id: String(eventId.n),
+      });
+
       const done = await pumpData();
-      await pumpInfo();
+      try {
+        await pumpInfo();
+      } catch {
+        // optional info file
+      }
       if (done) {
         return;
       }
 
-      // Watch for changes
+      // If thread is not actively running, emit all records and close — don't keep SSE open
+      const runningPath = join(storageRoot, "logs", threadTarget.bundleHash, `${threadId}.running`);
+      if (!existsSync(runningPath)) {
+        eventId.n++;
+        await stream.writeSSE({
+          event: "done",
+          data: JSON.stringify({ reason: "not-running" }),
+          id: String(eventId.n),
+        });
+        return;
+      }
+
       const controller = new AbortController();
       let completed = false;
 
-      const dataWatcher = watch(resolvedDataPath, async () => {
-        if (completed) return;
+      const threadsJsonWatcher = watch(threadsJsonPath, async () => {
+        if (completed) {
+          return;
+        }
         const finished = await pumpData();
         if (finished) {
           completed = true;
@@ -166,7 +341,9 @@ export function createLiveRoutes(storageRoot: string): Hono {
       let infoWatcher: ReturnType<typeof watch> | null = null;
       try {
         infoWatcher = watch(infoPath, async () => {
-          if (completed) return;
+          if (completed) {
+            return;
+          }
           await pumpInfo();
         });
       } catch {
@@ -175,11 +352,10 @@ export function createLiveRoutes(storageRoot: string): Hono {
 
       stream.onAbort(() => {
         completed = true;
-        dataWatcher.close();
+        threadsJsonWatcher.close();
         infoWatcher?.close();
       });
 
-      // Keep stream alive until completion or client disconnect
       await new Promise<void>((resolve) => {
         if (completed) {
           resolve();
@@ -189,7 +365,7 @@ export function createLiveRoutes(storageRoot: string): Hono {
         stream.onAbort(() => resolve());
       });
 
-      dataWatcher.close();
+      threadsJsonWatcher.close();
       infoWatcher?.close();
     });
   });

packages/cli-workflow/src/commands/serve/routes-thread.ts

@@ -1,21 +1,119 @@
+import { join } from "node:path";
+import { createCasStore, getContentMerklePayload, parseCasThreadNode } from "@uncaged/workflow-cas";
+import { FORK_BRANCH_ROLE, walkStateFramesNewestFirst } from "@uncaged/workflow-execute";
+import { END } from "@uncaged/workflow-runtime";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { Hono } from "hono";
 
-import { readTextFileIfExists } from "../../fs-utils.js";
+import { pathExists } from "../../fs-utils.js";
+import type { HistoricalThreadRow, ResolvedThreadRecord } from "../../thread-scan.js";
 import {
   listHistoricalThreads,
   listRunningThreads,
-  resolveThreadDataPath,
+  resolveThreadListStatus,
+  resolveThreadRecord,
 } from "../../thread-scan.js";
 import { cmdKill, cmdPause, cmdResume } from "../thread/control.js";
 import { cmdRun } from "../thread/run.js";
 
+async function readStartInfo(
+  cas: ReturnType<typeof createCasStore>,
+  startHash: string,
+): Promise<{ name: string | null; prompt: string | null }> {
+  const raw = await cas.get(startHash);
+  if (raw === null) return { name: null, prompt: null };
+  const parsed = parseCasThreadNode(raw);
+  if (parsed === null || parsed.kind !== "start") return { name: null, prompt: null };
+  const name = parsed.node.payload.name;
+  const promptHash = parsed.node.refs[0] ?? null;
+  let prompt: string | null = null;
+  if (promptHash !== null) {
+    prompt = await getContentMerklePayload(cas, promptHash);
+  }
+  return { name, prompt };
+}
+
+async function buildThreadDetailRecords(
+  storageRoot: string,
+  resolved: ResolvedThreadRecord,
+  runningMarkerPresent: boolean,
+  statusRow: HistoricalThreadRow,
+): Promise<unknown[]> {
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const frames = await walkStateFramesNewestFirst(cas, resolved.head);
+  const chronological = [...frames].reverse();
+
+  const { name: workflowName, prompt } = await readStartInfo(cas, resolved.start);
+
+  const status = await resolveThreadListStatus(storageRoot, statusRow, runningMarkerPresent);
+
+  const records: unknown[] = [
+    {
+      type: "thread-start",
+      workflow: workflowName ?? "unknown",
+      prompt: prompt ?? null,
+      threadId: resolved.threadId,
+      status,
+      timestamp: null,
+    },
+  ];
+
+  for (const fr of chronological) {
+    if (fr.payload.role === FORK_BRANCH_ROLE) {
+      continue;
+    }
+    if (fr.payload.role === END) {
+      const returnCode = fr.payload.meta.returnCode;
+      const summary = fr.payload.meta.summary;
+      if (typeof returnCode === "number" && typeof summary === "string") {
+        records.push({
+          type: "workflow-result",
+          returnCode,
+          content: summary,
+          timestamp: fr.payload.timestamp,
+        });
+      }
+      continue;
+    }
+    const payloadText = await getContentMerklePayload(cas, fr.payload.content);
+    const content =
+      payloadText !== null
+        ? payloadText
+        : `(content not in CAS; contentHash=${fr.payload.content})`;
+    records.push({
+      type: "role",
+      role: fr.payload.role,
+      contentHash: fr.payload.content,
+      content,
+      meta: fr.payload.meta,
+      timestamp: fr.payload.timestamp,
+    });
+  }
+
+  return records;
+}
+
 export function createThreadRoutes(storageRoot: string): Hono {
   const app = new Hono();
 
   app.get("/", async (c) => {
     const nameFilter = c.req.query("workflow") ?? null;
     const rows = await listHistoricalThreads(storageRoot, nameFilter);
-    return c.json({ threads: rows });
+    const threads = await Promise.all(
+      rows.map(async (r) => {
+        const runningPath = join(storageRoot, "logs", r.hash, `${r.threadId}.running`);
+        const runningMarkerPresent = await pathExists(runningPath);
+        const status = await resolveThreadListStatus(storageRoot, r, runningMarkerPresent);
+        return {
+          threadId: r.threadId,
+          workflow: r.workflowName,
+          hash: r.hash,
+          startedAt: new Date(r.activityTs).toISOString(),
+          status,
+        };
+      }),
+    );
+    return c.json({ threads });
   });
 
   app.get("/running", async (c) => {
@@ -25,22 +123,26 @@ export function createThreadRoutes(storageRoot: string): Hono {
 
   app.get("/:threadId", async (c) => {
     const threadId = c.req.param("threadId");
-    const dataPath = await resolveThreadDataPath(storageRoot, threadId);
-    if (dataPath === null) {
+    const resolved = await resolveThreadRecord(storageRoot, threadId);
+    if (resolved === null) {
       return c.json({ error: `thread not found: ${threadId}` }, 404);
     }
-    const text = await readTextFileIfExists(dataPath);
-    if (text === null) {
-      return c.json({ error: `thread data missing: ${threadId}` }, 404);
-    }
-    const lines = text.trim().split("\n");
-    const records = lines.map((line) => {
-      try {
-        return JSON.parse(line) as unknown;
-      } catch {
-        return { raw: line };
-      }
-    });
+    const runningPath = join(storageRoot, "logs", resolved.bundleHash, `${threadId}.running`);
+    const runningMarkerPresent = await pathExists(runningPath);
+    const statusRow = {
+      threadId: resolved.threadId,
+      hash: resolved.bundleHash,
+      workflowName: null,
+      source: resolved.source,
+      activityTs: 0,
+      head: resolved.head,
+    };
+    const records = await buildThreadDetailRecords(
+      storageRoot,
+      resolved,
+      runningMarkerPresent,
+      statusRow,
+    );
     return c.json({ threadId, records });
   });
 
@@ -54,13 +156,12 @@ export function createThreadRoutes(storageRoot: string): Hono {
 
     const name = body.workflow;
     const prompt = body.prompt;
-    const maxRounds = typeof body.maxRounds === "number" ? body.maxRounds : 10;
 
     if (typeof name !== "string" || typeof prompt !== "string") {
       return c.json({ error: "workflow (string) and prompt (string) are required" }, 400);
     }
 
-    const result = await cmdRun(storageRoot, name, prompt, maxRounds);
+    const result = await cmdRun(storageRoot, name, prompt);
     if (!result.ok) {
       return c.json({ error: result.error }, 400);
     }

packages/cli-workflow/src/commands/serve/serve.ts

@@ -1,12 +1,27 @@
+import { randomUUID } from "node:crypto";
+import { hostname as osHostname } from "node:os";
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
 import { serve } from "bun";
 
 import { printCliLine } from "../../cli-output.js";
 import { createApp } from "./app.js";
+import {
+  registerWithGateway,
+  startHeartbeat,
+  startTunnel,
+  unregisterFromGateway,
+} from "./tunnel.js";
 import type { ServeOptions } from "./types.js";
 
-export function startServer(storageRoot: string, options: ServeOptions): void {
-  const app = createApp(storageRoot);
+const DEFAULT_GATEWAY_URL = "https://workflow-gateway.shazhou.workers.dev";
+const HEARTBEAT_INTERVAL_MS = 60_000;
+
+export function startServer(
+  storageRoot: string,
+  options: ServeOptions,
+  agentToken: string | null,
+): void {
+  const app = createApp(storageRoot, agentToken);
 
   const server = serve({
     fetch: app.fetch,
@@ -28,30 +43,51 @@ function parsePortValue(value: string | undefined): Result<number, string> {
   return ok(parsed);
 }
 
+function requireNextArg(argv: string[], i: number, flag: string): Result<string, string> {
+  const next = argv[i + 1];
+  if (next === undefined) {
+    return err(`${flag} requires a value`);
+  }
+  return ok(next);
+}
+
 function parseServeArgv(argv: string[]): Result<ServeOptions, string> {
   let port = 7860;
   let hostname = "127.0.0.1";
+  let name = osHostname().split(".")[0].toLowerCase();
+  let noTunnel = false;
+  let gatewayUrl = DEFAULT_GATEWAY_URL;
+  const gatewaySecret = process.env.WORKFLOW_GATEWAY_SECRET ?? "";
+  const stringFlags: Record<string, (v: string) => void> = {
+    "--host": (v) => {
+      hostname = v;
+    },
+    "--name": (v) => {
+      name = v;
+    },
+    "--gateway": (v) => {
+      gatewayUrl = v;
+    },
+  };
 
   for (let i = 0; i < argv.length; i++) {
     const arg = argv[i];
     if (arg === "--port" || arg === "-p") {
       const portResult = parsePortValue(argv[i + 1]);
-      if (!portResult.ok) {
-        return portResult;
-      }
+      if (!portResult.ok) return portResult;
       port = portResult.value;
       i++;
-    } else if (arg === "--host") {
-      const next = argv[i + 1];
-      if (next === undefined) {
-        return err("--host requires a value");
-      }
-      hostname = next;
+    } else if (arg === "--no-tunnel") {
+      noTunnel = true;
+    } else if (arg in stringFlags) {
+      const r = requireNextArg(argv, i, arg);
+      if (!r.ok) return r;
+      stringFlags[arg](r.value);
       i++;
     }
   }
 
-  return ok({ port, hostname });
+  return ok({ port, hostname, name, noTunnel, gatewayUrl, gatewaySecret });
 }
 
 export async function dispatchServe(storageRoot: string, argv: string[]): Promise<number> {
@@ -61,7 +97,65 @@ export async function dispatchServe(storageRoot: string, argv: string[]): Promis
     return 1;
   }
 
-  startServer(storageRoot, parsed.value);
+  const options = parsed.value;
+  const agentToken = options.noTunnel ? null : randomUUID();
+  startServer(storageRoot, options, agentToken);
+
+  if (options.noTunnel) {
+    printCliLine("tunnel disabled (--no-tunnel)");
+    await new Promise(() => {});
+    return 0;
+  }
+
+  // Start cloudflared quick tunnel
+  printCliLine("starting cloudflared quick tunnel...");
+  const tunnel = await startTunnel(options.port);
+
+  if (!tunnel) {
+    printCliLine("failed to create tunnel — continuing without gateway registration");
+    await new Promise(() => {});
+    return 0;
+  }
+
+  printCliLine(`tunnel: ${tunnel.url}`);
+
+  // Register with gateway
+  if (options.gatewaySecret) {
+    const registered = await registerWithGateway(
+      options.gatewayUrl,
+      options.name,
+      tunnel.url,
+      options.gatewaySecret,
+      agentToken!,
+    );
+    if (registered) {
+      printCliLine(`registered with gateway as "${options.name}"`);
+    }
+
+    // Start heartbeat
+    const heartbeatTimer = startHeartbeat(
+      options.gatewayUrl,
+      options.name,
+      tunnel.url,
+      options.gatewaySecret,
+      agentToken!,
+      HEARTBEAT_INTERVAL_MS,
+    );
+
+    // Cleanup on exit
+    const cleanup = async () => {
+      clearInterval(heartbeatTimer);
+      printCliLine("unregistering from gateway...");
+      await unregisterFromGateway(options.gatewayUrl, options.name, options.gatewaySecret);
+      tunnel.process.kill();
+      process.exit(0);
+    };
+
+    process.on("SIGINT", cleanup);
+    process.on("SIGTERM", cleanup);
+  } else {
+    printCliLine("WORKFLOW_GATEWAY_SECRET not set — skipping gateway registration");
+  }
 
   // Keep process alive
   await new Promise(() => {});

packages/cli-workflow/src/commands/serve/tunnel.ts

@@ -0,0 +1,88 @@
+import { printCliLine } from "../../cli-output.js";
+
+type TunnelHandle = {
+  process: ReturnType<typeof Bun.spawn>;
+  url: string;
+};
+
+export async function startTunnel(port: number): Promise<TunnelHandle | null> {
+  const proc = Bun.spawn(["cloudflared", "tunnel", "--url", `http://localhost:${port}`], {
+    stdout: "pipe",
+    stderr: "pipe",
+  });
+
+  // cloudflared prints the URL to stderr
+  const reader = proc.stderr.getReader();
+  const decoder = new TextDecoder();
+  let buffer = "";
+  const deadline = Date.now() + 30_000;
+
+  while (Date.now() < deadline) {
+    const { done, value } = await reader.read();
+    if (done) break;
+    buffer += decoder.decode(value, { stream: true });
+    const match = buffer.match(/https:\/\/[a-z0-9-]+\.trycloudflare\.com/);
+    if (match) {
+      // Release the reader so stderr keeps flowing without backpressure
+      reader.releaseLock();
+      return { process: proc, url: match[0] };
+    }
+  }
+
+  reader.releaseLock();
+  proc.kill();
+  return null;
+}
+
+export async function registerWithGateway(
+  gatewayUrl: string,
+  name: string,
+  tunnelUrl: string,
+  secret: string,
+  agentToken: string,
+): Promise<boolean> {
+  try {
+    const resp = await fetch(`${gatewayUrl}/api/gateway/register`, {
+      method: "POST",
+      headers: { "Content-Type": "application/json" },
+      body: JSON.stringify({ name, url: tunnelUrl, secret, agentToken }),
+    });
+    if (!resp.ok) {
+      const body = await resp.text();
+      printCliLine(`gateway registration failed: ${resp.status} ${body}`);
+      return false;
+    }
+    return true;
+  } catch (e) {
+    printCliLine(`gateway registration error: ${e}`);
+    return false;
+  }
+}
+
+export async function unregisterFromGateway(
+  gatewayUrl: string,
+  name: string,
+  secret: string,
+): Promise<void> {
+  try {
+    await fetch(`${gatewayUrl}/api/gateway/register/${name}`, {
+      method: "DELETE",
+      headers: { Authorization: `Bearer ${secret}` },
+    });
+  } catch {
+    // Best effort — process is exiting
+  }
+}
+
+export function startHeartbeat(
+  gatewayUrl: string,
+  name: string,
+  tunnelUrl: string,
+  secret: string,
+  agentToken: string,
+  intervalMs: number,
+): ReturnType<typeof setInterval> {
+  return setInterval(() => {
+    registerWithGateway(gatewayUrl, name, tunnelUrl, secret, agentToken).catch(() => {});
+  }, intervalMs);
+}

packages/cli-workflow/src/commands/serve/types.ts

@@ -1,4 +1,8 @@
 export type ServeOptions = {
   port: number;
   hostname: string;
+  name: string;
+  noTunnel: boolean;
+  gatewayUrl: string;
+  gatewaySecret: string;
 };

packages/cli-workflow/src/commands/thread/dispatch.ts

@@ -26,12 +26,7 @@ export async function dispatchRun(storageRoot: string, argv: string[]): Promise<
     return 1;
   }
 
-  const result = await cmdRun(
-    storageRoot,
-    parsed.value.name,
-    parsed.value.prompt,
-    parsed.value.maxRounds,
-  );
+  const result = await cmdRun(storageRoot, parsed.value.name, parsed.value.prompt);
   if (!result.ok) {
     printCliError(result.error);
     return 1;
@@ -166,7 +161,7 @@ export async function dispatchFork(storageRoot: string, argv: string[]): Promise
 export const THREAD_SUBCOMMAND_TABLE: Record<string, CommandEntry> = {
   run: {
     handler: dispatchRun,
-    args: "<name> [--prompt <text>] [--max-rounds N]",
+    args: "<name> [--prompt <text>]",
     description: "Start a new thread executing a workflow",
   },
   list: {

packages/cli-workflow/src/commands/thread/fork.ts

@@ -1,11 +1,11 @@
 import { join } from "node:path";
-
+import { createCasStore } from "@uncaged/workflow-cas";
+import { prepareCasFork } from "@uncaged/workflow-execute";
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
-import { generateUlid } from "@uncaged/workflow-util";
-import { buildForkPlan } from "@uncaged/workflow-execute";
+import { generateUlid, getGlobalCasDir } from "@uncaged/workflow-util";
 
-import { pathExists, readTextFileIfExists } from "../../fs-utils.js";
-import { resolveThreadDataPath } from "../../thread-scan.js";
+import { pathExists } from "../../fs-utils.js";
+import { resolveThreadRecord } from "../../thread-scan.js";
 import { ensureWorkerForHash, sendWorkerTcpCommand } from "../../worker-spawn.js";
 
 export async function cmdFork(
@@ -13,49 +13,51 @@ export async function cmdFork(
   threadId: string,
   fromRole: string | null,
 ): Promise<Result<{ threadId: string }, string>> {
-  const dataPath = await resolveThreadDataPath(storageRoot, threadId);
-  if (dataPath === null) {
+  const resolved = await resolveThreadRecord(storageRoot, threadId);
+  if (resolved === null) {
     return err(`thread not found: ${threadId}`);
   }
-  const text = await readTextFileIfExists(dataPath);
-  if (text === null) {
-    return err(`thread data missing: ${threadId}`);
+
+  const bundlePath = join(storageRoot, "bundles", `${resolved.bundleHash}.esm.js`);
+  if (!(await pathExists(bundlePath))) {
+    return err(`bundle file missing for thread hash ${resolved.bundleHash}`);
   }
 
-  const plan = buildForkPlan(text, fromRole);
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const newThreadId = generateUlid(Date.now());
+
+  const plan = await prepareCasFork({
+    cas,
+    bundleDir: resolved.bundleDir,
+    bundleHash: resolved.bundleHash,
+    sourceThreadId: threadId,
+    headHash: resolved.head,
+    startHash: resolved.start,
+    newThreadId,
+    fromRole,
+  });
   if (!plan.ok) {
     return plan;
   }
 
-  const bundlePath = join(storageRoot, "bundles", `${plan.value.hash}.esm.js`);
-  if (!(await pathExists(bundlePath))) {
-    return err(`bundle file missing for thread hash ${plan.value.hash}`);
-  }
-
   const worker = await ensureWorkerForHash(storageRoot, plan.value.hash, bundlePath);
   if (!worker.ok) {
     return worker;
   }
 
-  const newThreadId = generateUlid(Date.now());
-  const stepsOnWire = plan.value.historicalSteps.map((s) => ({
-    role: s.role,
-    contentHash: s.contentHash,
-    meta: s.meta,
-    refs: s.refs,
-    timestamp: s.timestamp,
-  }));
-
+  const p = plan.value;
   const sent = await sendWorkerTcpCommand(
     worker.value.port,
     {
       type: "run",
       threadId: newThreadId,
-      workflowName: plan.value.workflowName,
-      prompt: plan.value.prompt,
-      options: plan.value.runOptions,
-      steps: stepsOnWire,
-      forkSourceThreadId: plan.value.sourceThreadId,
+      workflowName: p.workflowName,
+      prompt: p.prompt,
+      options: p.runOptions,
+      steps: p.steps,
+      stepTimestamps: p.stepTimestamps.length > 0 ? p.stepTimestamps : null,
+      forkSourceThreadId: threadId,
+      forkContinuation: p.forkContinuation,
     },
     { awaitResponseLine: false },
   );

packages/cli-workflow/src/commands/thread/live.ts

@@ -1,17 +1,26 @@
 import { watch } from "node:fs";
-import { readFile } from "node:fs/promises";
+import { mkdir, readFile } from "node:fs/promises";
 import { dirname, join } from "node:path";
-
-import type { CasStore, WorkflowCompletion } from "@uncaged/workflow-protocol";
-import { getGlobalCasDir } from "@uncaged/workflow-util";
 import { createCasStore, getContentMerklePayload } from "@uncaged/workflow-cas";
-import { tryParseRoleStepRecord, tryParseWorkflowResultRecord } from "@uncaged/workflow-execute";
+import {
+  FORK_BRANCH_ROLE,
+  readThreadsIndex,
+  type ThreadIndex,
+  walkStateFramesNewestFirst,
+} from "@uncaged/workflow-execute";
+import type { CasStore, WorkflowCompletion } from "@uncaged/workflow-protocol";
+import { END } from "@uncaged/workflow-runtime";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 
 import { dimGreyLine, highlightLiveRole } from "../../cli-color.js";
 import { printCliError, printCliLine } from "../../cli-output.js";
 import { pathExists } from "../../fs-utils.js";
 import type { ParsedLiveArgv } from "../../live-argv.js";
-import { findLatestThreadDataPath, resolveThreadDataPath } from "../../thread-scan.js";
+import {
+  findLatestThreadBundleTarget,
+  type LatestThreadTarget,
+  resolveThreadRecord,
+} from "../../thread-scan.js";
 import type { LiveRoleRow } from "./types.js";
 
 export const LIVE_CONTENT_MAX_LINES = 10;
@@ -49,16 +58,15 @@ function printSummary(result: WorkflowCompletion): void {
   printCliLine(`completed: returnCode=${result.returnCode} — ${result.summary}`);
 }
 
-type LiveSessionState = {
-  sawStart: boolean;
-  completed: boolean;
+type InfoLiveState = {
   carry: string;
   contentOffset: number;
 };
 
-type InfoLiveState = {
-  carry: string;
-  contentOffset: number;
+type CasLiveState = {
+  printedHashes: Set<string>;
+  lastHead: string | null;
+  completionEmitted: boolean;
 };
 
 function tryParseInfoRecord(obj: Record<string, unknown>): {
@@ -80,102 +88,140 @@ function tryParseInfoRecord(obj: Record<string, unknown>): {
   return { tag, content, timestamp };
 }
 
-async function handleJsonlLine(
-  rawLine: string,
-  state: LiveSessionState,
-  roleFilter: string | null,
-  cas: CasStore,
-): Promise<{ parseError: string | null; workflowResult: WorkflowCompletion | null }> {
-  const trimmed = rawLine.trim();
-  if (trimmed === "") {
-    return { parseError: null, workflowResult: null };
+function completionFromEndMeta(meta: Record<string, unknown>): WorkflowCompletion | null {
+  const returnCode = meta.returnCode;
+  const summary = meta.summary;
+  if (typeof returnCode !== "number" || typeof summary !== "string") {
+    return null;
   }
+  return { returnCode, summary };
+}
 
-  let rec: unknown;
-  try {
-    rec = JSON.parse(trimmed) as unknown;
-  } catch {
-    return { parseError: "invalid JSON in thread data file", workflowResult: null };
+async function emitRoleStepPrint(params: {
+  cas: CasStore;
+  role: string;
+  contentHash: string;
+  meta: Record<string, unknown>;
+  timestamp: number;
+  roleFilter: string | null;
+}): Promise<void> {
+  if (params.roleFilter !== null && params.role !== params.roleFilter) {
+    return;
   }
-  if (rec === null || typeof rec !== "object") {
-    return { parseError: "invalid record in thread data file", workflowResult: null };
-  }
-  const obj = rec as Record<string, unknown>;
-
-  if (!state.sawStart) {
-    state.sawStart = true;
-    return { parseError: null, workflowResult: null };
-  }
-
-  const wf = tryParseWorkflowResultRecord(obj);
-  if (wf !== null) {
-    state.completed = true;
-    return { parseError: null, workflowResult: wf };
-  }
-
-  const roleRow = tryParseRoleStepRecord(obj);
-  if (roleRow === null) {
-    return {
-      parseError: "unrecognized record in thread data (expected role step or result)",
-      workflowResult: null,
-    };
-  }
-
-  if (roleFilter !== null && roleRow.role !== roleFilter) {
-    return { parseError: null, workflowResult: null };
-  }
-
-  const payload = await getContentMerklePayload(cas, roleRow.contentHash);
+  const payload = await getContentMerklePayload(params.cas, params.contentHash);
   const content =
-    payload !== null ? payload : `(content not in CAS; contentHash=${roleRow.contentHash})`;
+    payload !== null ? payload : `(content not in CAS; contentHash=${params.contentHash})`;
 
   const row: LiveRoleRow = {
-    role: roleRow.role,
+    role: params.role,
     content,
-    meta: roleRow.meta,
-    timestamp: roleRow.timestamp,
+    meta: params.meta,
+    timestamp: params.timestamp,
   };
   for (const outLine of renderLiveRoleStepLines(row, highlightLiveRole(row.role))) {
     printCliLine(outLine);
   }
-  return { parseError: null, workflowResult: null };
 }
 
-async function pumpNewContent(
-  dataPath: string,
-  state: LiveSessionState,
-  roleFilter: string | null,
-  cas: CasStore,
-): Promise<number | null> {
-  let text: string;
+async function emitStatesReachableFromHead(params: {
+  cas: CasStore;
+  headHash: string;
+  state: CasLiveState;
+  roleFilter: string | null;
+}): Promise<WorkflowCompletion | null> {
+  const frames = await walkStateFramesNewestFirst(params.cas, params.headHash);
+  const chronological = [...frames].reverse();
+
+  for (const fr of chronological) {
+    if (params.state.printedHashes.has(fr.hash)) {
+      continue;
+    }
+    params.state.printedHashes.add(fr.hash);
+
+    const role = fr.payload.role;
+    if (role === FORK_BRANCH_ROLE) {
+      continue;
+    }
+
+    if (role === END) {
+      const wf = completionFromEndMeta(fr.payload.meta);
+      if (wf !== null) {
+        printSummary(wf);
+        return wf;
+      }
+      continue;
+    }
+
+    await emitRoleStepPrint({
+      cas: params.cas,
+      role,
+      contentHash: fr.payload.content,
+      meta: fr.payload.meta,
+      timestamp: fr.payload.timestamp,
+      roleFilter: params.roleFilter,
+    });
+  }
+
+  return null;
+}
+
+async function pumpThreadsJson(params: {
+  storageRoot: string;
+  bundleDir: string;
+  bundleHash: string;
+  threadId: string;
+  state: CasLiveState;
+  roleFilter: string | null;
+  cas: CasStore;
+}): Promise<number | null> {
+  let idx: ThreadIndex;
   try {
-    text = await readFile(dataPath, "utf8");
+    idx = await readThreadsIndex(params.bundleDir);
   } catch {
-    return null;
+    idx = {};
   }
 
-  if (text.length < state.contentOffset) {
-    state.contentOffset = 0;
-    state.carry = "";
+  const active = idx[params.threadId];
+
+  if (active === undefined) {
+    if (params.state.completionEmitted) {
+      return null;
+    }
+    const hist = await resolveThreadRecord(params.storageRoot, params.threadId);
+    if (hist === null || hist.source !== "history") {
+      return null;
+    }
+    params.state.completionEmitted = true;
+    const wf = await emitStatesReachableFromHead({
+      cas: params.cas,
+      headHash: hist.head,
+      state: params.state,
+      roleFilter: params.roleFilter,
+    });
+    return wf !== null ? 0 : null;
   }
 
-  const chunk = text.slice(state.contentOffset);
-  state.contentOffset = text.length;
-  state.carry += chunk;
+  const head = active.head;
+  if (params.state.lastHead === null) {
+    params.state.lastHead = head;
+    const wf = await emitStatesReachableFromHead({
+      cas: params.cas,
+      headHash: head,
+      state: params.state,
+      roleFilter: params.roleFilter,
+    });
+    return wf !== null ? 0 : null;
+  }
 
-  const parts = state.carry.split("\n");
-  state.carry = parts.pop() ?? "";
-
-  for (const line of parts) {
-    const { parseError, workflowResult } = await handleJsonlLine(line, state, roleFilter, cas);
-    if (parseError !== null) {
-      printCliError(parseError);
-      return 1;
-    }
-    if (workflowResult !== null) {
-      printSummary(workflowResult);
-      return 0;
-    }
+  if (head !== params.state.lastHead) {
+    params.state.lastHead = head;
+    const wf = await emitStatesReachableFromHead({
+      cas: params.cas,
+      headHash: head,
+      state: params.state,
+      roleFilter: params.roleFilter,
+    });
+    return wf !== null ? 0 : null;
   }
 
   return null;
@@ -292,9 +338,9 @@ function watchLivePaths(params: { tasks: WatchPumpTask[]; signal: AbortSignal })
         schedulePump(path, pump);
       });
       watchers.push(watcher);
-      watcher.on("error", (err: Error) => {
+      watcher.on("error", (errObj: Error) => {
         closeAll();
-        reject(err);
+        reject(errObj);
       });
     }
 
@@ -310,17 +356,14 @@ function watchLivePaths(params: { tasks: WatchPumpTask[]; signal: AbortSignal })
   });
 }
 
-type LiveThreadTarget = {
-  threadId: string;
-  dataPath: string;
-};
+type LiveThreadTarget = LatestThreadTarget;
 
 async function resolveLiveThreadTarget(
   storageRoot: string,
   parsed: ParsedLiveArgv,
 ): Promise<LiveThreadTarget | null> {
   if (parsed.latest) {
-    const found = await findLatestThreadDataPath(storageRoot);
+    const found = await findLatestThreadBundleTarget(storageRoot);
     if (found === null) {
       printCliError("live: no threads found");
       return null;
@@ -333,36 +376,56 @@ async function resolveLiveThreadTarget(
     printCliError("live: internal error: missing thread id");
     return null;
   }
-  const resolved = await resolveThreadDataPath(storageRoot, id);
+  const resolved = await resolveThreadRecord(storageRoot, id);
   if (resolved === null) {
     printCliError(`thread not found: ${id}`);
     return null;
   }
-  return { threadId: id, dataPath: resolved };
+  return {
+    threadId: id,
+    bundleHash: resolved.bundleHash,
+    bundleDir: resolved.bundleDir,
+    threadsJsonPath: join(resolved.bundleDir, "threads.json"),
+  };
 }
 
 async function buildLiveWatchTasks(params: {
-  dataPath: string;
-  infoPath: string;
+  storageRoot: string;
+  target: LiveThreadTarget;
   debug: boolean;
-  dataState: LiveSessionState;
+  dataState: CasLiveState;
   infoState: InfoLiveState;
   roleFilter: string | null;
   cas: CasStore;
 }): Promise<WatchPumpTask[]> {
-  const { dataPath, infoPath, debug, dataState, infoState, roleFilter, cas } = params;
+  const infoPath = join(
+    params.storageRoot,
+    "logs",
+    params.target.bundleHash,
+    `${params.target.threadId}.info.jsonl`,
+  );
+
   const tasks: WatchPumpTask[] = [
     {
-      path: dataPath,
-      pump: () => pumpNewContent(dataPath, dataState, roleFilter, cas),
+      path: params.target.threadsJsonPath,
+      pump: () =>
+        pumpThreadsJson({
+          storageRoot: params.storageRoot,
+          bundleDir: params.target.bundleDir,
+          bundleHash: params.target.bundleHash,
+          threadId: params.target.threadId,
+          state: params.dataState,
+          roleFilter: params.roleFilter,
+          cas: params.cas,
+        }),
     },
   ];
 
-  if (debug && (await pathExists(infoPath))) {
+  if (params.debug && (await pathExists(infoPath))) {
     tasks.push({
       path: infoPath,
       pump: async () => {
-        await pumpNewInfoContent(infoPath, infoState);
+        await pumpNewInfoContent(infoPath, params.infoState);
         return null;
       },
     });
@@ -377,16 +440,13 @@ export async function cmdLive(storageRoot: string, parsed: ParsedLiveArgv): Prom
     return 1;
   }
 
-  const { threadId, dataPath } = target;
   const roleFilter = parsed.role;
-  const infoPath = join(dirname(dataPath), `${threadId}.info.jsonl`);
   const cas = createCasStore(getGlobalCasDir(storageRoot));
 
-  const dataState: LiveSessionState = {
-    sawStart: false,
-    completed: false,
-    carry: "",
-    contentOffset: 0,
+  const dataState: CasLiveState = {
+    printedHashes: new Set<string>(),
+    lastHead: null,
+    completionEmitted: false,
   };
 
   const infoState: InfoLiveState = {
@@ -401,22 +461,29 @@ export async function cmdLive(storageRoot: string, parsed: ParsedLiveArgv): Prom
   process.on("SIGINT", onSigInt);
 
   try {
-    const firstData = await pumpNewContent(dataPath, dataState, roleFilter, cas);
-    if (firstData === 1) {
-      return 1;
-    }
+    await mkdir(dirname(target.threadsJsonPath), { recursive: true });
 
+    const firstData = await pumpThreadsJson({
+      storageRoot,
+      bundleDir: target.bundleDir,
+      bundleHash: target.bundleHash,
+      threadId: target.threadId,
+      state: dataState,
+      roleFilter,
+      cas,
+    });
+    const infoPath = join(storageRoot, "logs", target.bundleHash, `${target.threadId}.info.jsonl`);
     if (parsed.debug && (await pathExists(infoPath))) {
       await pumpNewInfoContent(infoPath, infoState);
     }
 
-    if (firstData === 0 || dataState.completed) {
+    if (firstData === 0) {
       return 0;
     }
 
     const tasks = await buildLiveWatchTasks({
-      dataPath,
-      infoPath,
+      storageRoot,
+      target,
       debug: parsed.debug,
       dataState,
       infoState,

packages/cli-workflow/src/commands/thread/rm.ts

@@ -1,25 +1,35 @@
 import { unlink } from "node:fs/promises";
-import { dirname, join } from "node:path";
-
+import { join } from "node:path";
+import {
+  garbageCollectCas,
+  removeThreadEntry,
+  removeThreadHistoryEntries,
+} from "@uncaged/workflow-execute";
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
-import { garbageCollectCas } from "@uncaged/workflow-execute";
 
-import { resolveThreadDataPath } from "../../thread-scan.js";
+import { resolveThreadRecord } from "../../thread-scan.js";
 
 export async function cmdThreadRemove(
   storageRoot: string,
   threadId: string,
 ): Promise<Result<void, string>> {
-  const dataPath = await resolveThreadDataPath(storageRoot, threadId);
-  if (dataPath === null) {
+  const resolved = await resolveThreadRecord(storageRoot, threadId);
+  if (resolved === null) {
     return err(`thread not found: ${threadId}`);
   }
 
-  const dir = dirname(dataPath);
-  const infoPath = join(dir, `${threadId}.info.jsonl`);
-  const runningPath = join(dir, `${threadId}.running`);
+  if (resolved.source === "active") {
+    await removeThreadEntry(resolved.bundleDir, threadId);
+  } else {
+    const hist = await removeThreadHistoryEntries(resolved.bundleDir, threadId);
+    if (!hist.ok) {
+      return hist;
+    }
+  }
+
+  const infoPath = join(storageRoot, "logs", resolved.bundleHash, `${threadId}.info.jsonl`);
+  const runningPath = join(storageRoot, "logs", resolved.bundleHash, `${threadId}.running`);
 
-  await unlink(dataPath);
   await unlink(infoPath).catch(() => {});
   await unlink(runningPath).catch(() => {});
 

packages/cli-workflow/src/commands/thread/run.ts

@@ -1,8 +1,8 @@
 import { join } from "node:path";
 
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
-import { generateUlid } from "@uncaged/workflow-util";
 import { getRegisteredWorkflow, readWorkflowRegistry } from "@uncaged/workflow-register";
+import { generateUlid } from "@uncaged/workflow-util";
 import { ensureWorkerForHash, sendWorkerTcpCommand } from "../../worker-spawn.js";
 import { validateCliWorkflowName } from "../../workflow-name.js";
 
@@ -10,7 +10,6 @@ export async function cmdRun(
   storageRoot: string,
   name: string,
   prompt: string,
-  maxRounds: number,
 ): Promise<Result<{ threadId: string }, string>> {
   const nameOk = validateCliWorkflowName(name);
   if (!nameOk.ok) {
@@ -41,7 +40,7 @@ export async function cmdRun(
       threadId,
       workflowName: name,
       prompt,
-      options: { maxRounds, depth: 0 },
+      options: { depth: 0 },
     },
     { awaitResponseLine: false },
   );

packages/cli-workflow/src/commands/thread/show.ts

@@ -1,19 +1,49 @@
+import { createCasStore, getContentMerklePayload } from "@uncaged/workflow-cas";
+import { FORK_BRANCH_ROLE, walkStateFramesNewestFirst } from "@uncaged/workflow-execute";
 import { err, ok, type Result } from "@uncaged/workflow-protocol";
+import { END } from "@uncaged/workflow-runtime";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 
-import { readTextFileIfExists } from "../../fs-utils.js";
-import { resolveThreadDataPath } from "../../thread-scan.js";
+import { resolveThreadRecord } from "../../thread-scan.js";
 
 export async function cmdThreadShow(
   storageRoot: string,
   threadId: string,
 ): Promise<Result<string, string>> {
-  const dataPath = await resolveThreadDataPath(storageRoot, threadId);
-  if (dataPath === null) {
+  const resolved = await resolveThreadRecord(storageRoot, threadId);
+  if (resolved === null) {
     return err(`thread not found: ${threadId}`);
   }
-  const text = await readTextFileIfExists(dataPath);
-  if (text === null) {
-    return err(`thread data missing: ${threadId}`);
+
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const frames = await walkStateFramesNewestFirst(cas, resolved.head);
+  const chronological = [...frames].reverse();
+
+  const steps: Array<{ role: string; hash: string; timestamp: number; content: string }> = [];
+  for (const fr of chronological) {
+    if (fr.payload.role === END || fr.payload.role === FORK_BRANCH_ROLE) {
+      continue;
+    }
+    const payloadText = await getContentMerklePayload(cas, fr.payload.content);
+    steps.push({
+      role: fr.payload.role,
+      hash: fr.hash,
+      timestamp: fr.payload.timestamp,
+      content:
+        payloadText !== null
+          ? payloadText
+          : `(content not in CAS; contentHash=${fr.payload.content})`,
+    });
   }
-  return ok(text.endsWith("\n") ? text.slice(0, -1) : text);
+
+  const payload = {
+    threadId: resolved.threadId,
+    bundleHash: resolved.bundleHash,
+    head: resolved.head,
+    start: resolved.start,
+    source: resolved.source,
+    steps,
+  };
+
+  return ok(JSON.stringify(payload, null, 2));
 }

packages/cli-workflow/src/commands/workflow/add.ts

@@ -1,8 +1,7 @@
 import { readFile, stat } from "node:fs/promises";
 import { basename, resolve } from "node:path";
-
-import { err, ok, type Result } from "@uncaged/workflow-protocol";
 import { hashWorkflowBundleBytes } from "@uncaged/workflow-cas";
+import { err, ok, type Result } from "@uncaged/workflow-protocol";
 import {
   extractBundleExports,
   readWorkflowRegistry,

packages/cli-workflow/src/run-argv.ts

@@ -3,12 +3,12 @@ import { err, ok, type Result } from "@uncaged/workflow-protocol";
 export type ParsedRunArgv = {
   name: string;
   prompt: string;
-  maxRounds: number;
 };
 
-type FlagOk = { kind: "prompt"; value: string } | { kind: "max-rounds"; value: number };
-
-function parseFlagAt(argv: string[], index: number): Result<FlagOk, string> | null {
+function parseFlagAt(
+  argv: string[],
+  index: number,
+): Result<{ kind: "prompt"; value: string }, string> | null {
   const flag = argv[index];
   if (flag === "--prompt") {
     const value = argv[index + 1];
@@ -17,24 +17,12 @@ function parseFlagAt(argv: string[], index: number): Result<FlagOk, string> | nu
     }
     return ok({ kind: "prompt", value });
   }
-  if (flag === "--max-rounds") {
-    const value = argv[index + 1];
-    if (value === undefined) {
-      return err("missing value for --max-rounds");
-    }
-    const n = Number(value);
-    if (!Number.isFinite(n) || !Number.isInteger(n) || n < 0) {
-      return err("--max-rounds must be a non-negative integer");
-    }
-    return ok({ kind: "max-rounds", value: n });
-  }
   return null;
 }
 
 export function parseRunArgv(argv: string[]): Result<ParsedRunArgv, string> {
   let name: string | undefined;
   let prompt = "";
-  let maxRounds = 5;
 
   let i = 0;
   const first = argv[0];
@@ -54,12 +42,7 @@ export function parseRunArgv(argv: string[]): Result<ParsedRunArgv, string> {
     }
 
     const flag = parsed.value;
-    if (flag.kind === "prompt") {
-      prompt = flag.value;
-      i += 2;
-      continue;
-    }
-    maxRounds = flag.value;
+    prompt = flag.value;
     i += 2;
   }
 
@@ -67,5 +50,5 @@ export function parseRunArgv(argv: string[]): Result<ParsedRunArgv, string> {
     return err("run requires <name>");
   }
 
-  return ok({ name, prompt, maxRounds });
+  return ok({ name, prompt });
 }

packages/cli-workflow/src/skill.ts

@@ -70,8 +70,8 @@ function formatSkillCli(): string {
 |---------|-------------|
 | **Workflow** | A single-file ESM bundle (\`.esm.js\`) that exports \`run\` and \`descriptor\`. Identified by name and XXH64 hash. |
 | **Bundle** | The physical \`.esm.js\` file stored in the bundles directory. Immutable once written. |
-| **Thread** | A single execution of a workflow, identified by a ULID. Persists state as JSONL files. |
-| **CAS** | Content-Addressable Storage. Per-thread key-value store keyed by content hash. |
+| **Thread** | A single execution of a workflow, identified by a ULID. CAS state chain; \`threads.json\` for active; \`history/*.jsonl\` when done; \`.info.jsonl\` for debug logs. |
+| **CAS** | Global content-addressable blob store (\`cas/\`), keyed by hash. |
 | **Registry** | \`workflow.yaml\` — maps workflow names to their current and historical bundle hashes. |
 
 ## Commands
@@ -85,6 +85,12 @@ ${commandSections.join("\n\n")}
 | \`run\` | \`thread run\` | Shortcut to start a thread |
 | \`live\` | \`thread live\` | Shortcut to attach to a thread |
 
+### serve
+
+| Command | Args | Description |
+|---------|------|-------------|
+| \`serve\` | \`[--port N] [--host ADDR] [--name NAME]\` | Start HTTP API server with auto-tunnel. \`--name\` registers with the gateway. |
+
 ## Typical Workflow
 
 1. \`uncaged-workflow workflow add my-wf ./my-wf.esm.js\` — register a workflow
@@ -92,6 +98,15 @@ ${commandSections.join("\n\n")}
 3. \`uncaged-workflow live --latest\` — attach and watch output
 4. \`uncaged-workflow thread show <thread-id>\` — inspect completed thread
 
+## Thread Status
+
+| Status | Meaning |
+|--------|---------|
+| \`running\` | Worker process is alive (\`.running\` marker + live PID) |
+| \`active\` | In \`threads.json\` but not currently running (paused or waiting) |
+| \`completed\` | Finished with \`returnCode === 0\` (has \`__end__\` frame in CAS) |
+| \`failed\` | Finished with non-zero return code, or worker crashed (dead PID / no ctl) |
+
 ## Exit Codes
 
 | Code | Meaning |
@@ -103,7 +118,9 @@ ${commandSections.join("\n\n")}
 
 | Variable | Description |
 |----------|-------------|
-| \`UNCAGED_WORKFLOW_STORAGE_ROOT\` | Override the default storage directory for all workflow data |
+| \`WORKFLOW_STORAGE_ROOT\` | Override the default storage directory for all workflow data |
+| \`UNCAGED_WORKFLOW_STORAGE_ROOT\` | Same as above (takes priority) |
+| \`WORKFLOW_LLM_API_KEY\` | API key for LLM calls during workflow execution |
 `;
 }
 
@@ -200,7 +217,6 @@ Each role has:
 |-------|------|---------|
 | \`description\` | string | What the role does |
 | \`systemPrompt\` | string | System prompt for the agent |
-| \`extractPrompt\` | string | Instruction for extracting structured meta |
 | \`schema\` | ZodSchema | Validates the extracted meta |
 | \`extractRefs\` | fn or null | Extracts CAS hashes from meta for DAG linking |
 

packages/cli-workflow/src/thread-scan.ts

@@ -1,23 +1,90 @@
 import { readdir, stat } from "node:fs/promises";
 import { join } from "node:path";
+import { createCasStore, parseCasThreadNode } from "@uncaged/workflow-cas";
+import {
+  readThreadsIndex,
+  type ThreadHistoryEntry,
+  type ThreadIndex,
+  walkStateFramesNewestFirst,
+} from "@uncaged/workflow-execute";
+import { END } from "@uncaged/workflow-runtime";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
 
 import { pathExists, readTextFileIfExists } from "./fs-utils.js";
+import { readWorkerCtl } from "./worker-spawn.js";
 
-function parseFirstJsonLineObject(text: string): Record<string, unknown> | null {
-  const firstLine = text.split("\n")[0];
-  if (firstLine === undefined || firstLine.trim() === "") {
+async function readWorkflowNameFromStartHash(
+  storageRoot: string,
+  startHash: string,
+): Promise<string | null> {
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const yamlText = await cas.get(startHash);
+  if (yamlText === null) {
     return null;
   }
-  let parsed: unknown;
-  try {
-    parsed = JSON.parse(firstLine) as unknown;
-  } catch {
+  const parsed = parseCasThreadNode(yamlText);
+  if (parsed === null || parsed.kind !== "start") {
     return null;
   }
-  if (parsed === null || typeof parsed !== "object") {
-    return null;
+  return parsed.node.payload.name;
+}
+
+async function listBundleHashDirs(storageRoot: string): Promise<string[]> {
+  const bundlesRoot = join(storageRoot, "bundles");
+  if (!(await pathExists(bundlesRoot))) {
+    return [];
   }
-  return parsed as Record<string, unknown>;
+  const names = await readdir(bundlesRoot);
+  const out: string[] = [];
+  for (const name of names) {
+    const p = join(bundlesRoot, name);
+    try {
+      const st = await stat(p);
+      if (st.isDirectory()) {
+        out.push(name);
+      }
+    } catch {}
+  }
+  out.sort();
+  return out;
+}
+
+async function parseHistoryFile(path: string): Promise<ThreadHistoryEntry[]> {
+  const text = await readTextFileIfExists(path);
+  if (text === null) {
+    return [];
+  }
+  const out: ThreadHistoryEntry[] = [];
+  for (const line of text.split("\n")) {
+    const trimmed = line.trim();
+    if (trimmed === "") {
+      continue;
+    }
+    let raw: unknown;
+    try {
+      raw = JSON.parse(trimmed) as unknown;
+    } catch {
+      continue;
+    }
+    if (raw === null || typeof raw !== "object") {
+      continue;
+    }
+    const rec = raw as Record<string, unknown>;
+    const threadId = rec.threadId;
+    const head = rec.head;
+    const start = rec.start;
+    const completedAt = rec.completedAt;
+    if (
+      typeof threadId !== "string" ||
+      typeof head !== "string" ||
+      typeof start !== "string" ||
+      typeof completedAt !== "number"
+    ) {
+      continue;
+    }
+    out.push({ threadId, head, start, completedAt });
+  }
+  return out;
 }
 
 export type RunningThreadRow = {
@@ -30,32 +97,173 @@ export type HistoricalThreadRow = {
   threadId: string;
   hash: string;
   workflowName: string | null;
+  /** Active entry from `threads.json` vs completed line from `history/*.jsonl`. */
+  source: "active" | "history";
+  /** `updatedAt` for active threads; `completedAt` for history (ms since epoch). */
+  activityTs: number;
+  /** Current CAS head (`threads.json` / history row). */
+  head: string;
 };
 
-async function readThreadStartTimestampMs(dataPath: string): Promise<number | null> {
-  const text = await readTextFileIfExists(dataPath);
-  if (text === null) {
-    return null;
+export type ResolvedThreadRecord = {
+  threadId: string;
+  bundleHash: string;
+  bundleDir: string;
+  head: string;
+  start: string;
+  source: "active" | "history";
+};
+
+/** Resolve a thread via `threads.json` (active) or `history/*.jsonl` (completed). */
+// biome-ignore lint/complexity/noExcessiveCognitiveComplexity: scans all bundle dirs for thread id
+export async function resolveThreadRecord(
+  storageRoot: string,
+  threadId: string,
+): Promise<ResolvedThreadRecord | null> {
+  const hashes = await listBundleHashDirs(storageRoot);
+  for (const bundleHash of hashes) {
+    const bundleDir = join(storageRoot, "bundles", bundleHash);
+    let index: ThreadIndex;
+    try {
+      index = await readThreadsIndex(bundleDir);
+    } catch {
+      continue;
+    }
+    const active = index[threadId];
+    if (active !== undefined) {
+      return {
+        threadId,
+        bundleHash,
+        bundleDir,
+        head: active.head,
+        start: active.start,
+        source: "active",
+      };
+    }
   }
-  const parsed = parseFirstJsonLineObject(text);
-  if (parsed === null) {
-    return null;
+
+  for (const bundleHash of hashes) {
+    const bundleDir = join(storageRoot, "bundles", bundleHash);
+    const histDir = join(bundleDir, "history");
+    if (!(await pathExists(histDir))) {
+      continue;
+    }
+    let files: string[];
+    try {
+      files = await readdir(histDir);
+    } catch {
+      continue;
+    }
+    for (const name of files) {
+      if (!name.endsWith(".jsonl")) {
+        continue;
+      }
+      const entries = await parseHistoryFile(join(histDir, name));
+      for (const e of entries) {
+        if (e.threadId === threadId) {
+          return {
+            threadId,
+            bundleHash,
+            bundleDir,
+            head: e.head,
+            start: e.start,
+            source: "history",
+          };
+        }
+      }
+    }
   }
-  const ts = parsed.timestamp;
-  return typeof ts === "number" && Number.isFinite(ts) ? ts : null;
+
+  return null;
 }
 
-async function readWorkflowNameFromDataJsonl(dataPath: string): Promise<string | null> {
-  const text = await readTextFileIfExists(dataPath);
-  if (text === null) {
-    return null;
+export type ThreadHeadTerminal =
+  | { kind: "non-terminal" }
+  | { kind: "terminal"; returnCode: number };
+
+/** True when the newest frame at `headHash` is `__end__` (workflow finished in CAS). */
+export async function readThreadTerminalFromHead(
+  storageRoot: string,
+  headHash: string,
+): Promise<ThreadHeadTerminal> {
+  const cas = createCasStore(getGlobalCasDir(storageRoot));
+  const frames = await walkStateFramesNewestFirst(cas, headHash);
+  const newest = frames[0];
+  if (newest === undefined) {
+    return { kind: "non-terminal" };
   }
-  const parsed = parseFirstJsonLineObject(text);
-  if (parsed === null) {
-    return null;
+  if (newest.payload.role !== END) {
+    return { kind: "non-terminal" };
   }
-  const name = parsed.name;
-  return typeof name === "string" ? name : null;
+  const rc = newest.payload.meta.returnCode;
+  if (typeof rc !== "number") {
+    return { kind: "terminal", returnCode: 1 };
+  }
+  return { kind: "terminal", returnCode: rc };
+}
+
+export type ThreadListStatus = "running" | "active" | "completed" | "failed";
+
+/** Combines `.running` marker with CAS head: stale markers do not imply `running`. */
+export async function resolveThreadListStatus(
+  storageRoot: string,
+  row: HistoricalThreadRow,
+  runningMarkerPresent: boolean,
+): Promise<ThreadListStatus> {
+  const terminal = await readThreadTerminalFromHead(storageRoot, row.head);
+  if (terminal.kind === "terminal") {
+    return terminal.returnCode !== 0 ? "failed" : "completed";
+  }
+  if (row.source === "history") {
+    return "completed";
+  }
+  if (runningMarkerPresent) {
+    const ctlResult = await readWorkerCtl(storageRoot, row.hash);
+    if (ctlResult.ok) {
+      try {
+        process.kill(ctlResult.value.pid, 0);
+        return "running";
+      } catch {
+        // Worker PID is dead but .running marker remains — crashed thread
+        return "failed";
+      }
+    }
+    return "running";
+  }
+  // No .running marker + no __end__ + source "active" → check if worker is dead (crashed)
+  const ctlResult = await readWorkerCtl(storageRoot, row.hash);
+  if (!ctlResult.ok) {
+    // No ctl file means worker never registered or was already cleaned up — dead thread
+    return "failed";
+  }
+  try {
+    process.kill(ctlResult.value.pid, 0);
+  } catch {
+    // Worker PID is dead, thread never finished — crashed
+    return "failed";
+  }
+  return "active";
+}
+
+async function appendRunningThreadRowIfLive(
+  storageRoot: string,
+  hash: string,
+  threadId: string,
+  out: RunningThreadRow[],
+): Promise<void> {
+  const resolved = await resolveThreadRecord(storageRoot, threadId);
+  if (resolved !== null && resolved.bundleHash !== hash) {
+    return;
+  }
+  if (resolved !== null) {
+    const terminal = await readThreadTerminalFromHead(storageRoot, resolved.head);
+    if (terminal.kind === "terminal") {
+      return;
+    }
+  }
+  const workflowName =
+    resolved !== null ? await readWorkflowNameFromStartHash(storageRoot, resolved.start) : null;
+  out.push({ threadId, hash, workflowName });
 }
 
 /** Threads currently executing — identified via `<threadId>.running` markers. */
@@ -82,9 +290,7 @@ export async function listRunningThreads(storageRoot: string): Promise<RunningTh
         continue;
       }
       const threadId = fileName.slice(0, -".running".length);
-      const dataPath = join(dir, `${threadId}.data.jsonl`);
-      const workflowName = await readWorkflowNameFromDataJsonl(dataPath);
-      out.push({ threadId, hash, workflowName });
+      await appendRunningThreadRowIfLive(storageRoot, hash, threadId, out);
     }
   }
 
@@ -98,41 +304,84 @@ export async function listRunningThreads(storageRoot: string): Promise<RunningTh
 }
 
 /**
- * Historical threads discovered via `*.data.jsonl`.
- * When `workflowNameFilter` is non-null, only threads whose start record `name` matches are returned.
+ * Threads discovered via `threads.json` (active) and `history/*.jsonl` (completed).
+ * When `workflowNameFilter` is non-null, only threads whose StartNode `name` matches are returned.
  */
+// biome-ignore lint/complexity/noExcessiveCognitiveComplexity: merges active index + partitioned history
 export async function listHistoricalThreads(
   storageRoot: string,
   workflowNameFilter: string | null,
 ): Promise<HistoricalThreadRow[]> {
-  const logsRoot = join(storageRoot, "logs");
-  if (!(await pathExists(logsRoot))) {
-    return [];
-  }
-
-  const hashes = await readdir(logsRoot);
+  const hashes = await listBundleHashDirs(storageRoot);
+  const seen = new Set<string>();
   const out: HistoricalThreadRow[] = [];
 
-  for (const hash of hashes) {
-    const dir = join(logsRoot, hash);
-    let entries: string[];
+  for (const bundleHash of hashes) {
+    const bundleDir = join(storageRoot, "bundles", bundleHash);
+    let index: ThreadIndex;
     try {
-      entries = await readdir(dir);
+      index = await readThreadsIndex(bundleDir);
     } catch {
       continue;
     }
-
-    for (const fileName of entries) {
-      if (!fileName.endsWith(".data.jsonl")) {
+    for (const threadId of Object.keys(index)) {
+      const key = `${bundleHash}/${threadId}`;
+      if (seen.has(key)) {
         continue;
       }
-      const threadId = fileName.slice(0, -".data.jsonl".length);
-      const dataPath = join(dir, fileName);
-      const workflowName = await readWorkflowNameFromDataJsonl(dataPath);
+      seen.add(key);
+      const entry = index[threadId];
+      if (entry === undefined) {
+        continue;
+      }
+      const workflowName = await readWorkflowNameFromStartHash(storageRoot, entry.start);
       if (workflowNameFilter !== null && workflowName !== workflowNameFilter) {
         continue;
       }
-      out.push({ threadId, hash, workflowName });
+      out.push({
+        threadId,
+        hash: bundleHash,
+        workflowName,
+        source: "active",
+        activityTs: entry.updatedAt,
+        head: entry.head,
+      });
+    }
+
+    const histDir = join(bundleDir, "history");
+    if (!(await pathExists(histDir))) {
+      continue;
+    }
+    let files: string[];
+    try {
+      files = await readdir(histDir);
+    } catch {
+      continue;
+    }
+    for (const name of files) {
+      if (!name.endsWith(".jsonl")) {
+        continue;
+      }
+      const entries = await parseHistoryFile(join(histDir, name));
+      for (const e of entries) {
+        const key = `${bundleHash}/${e.threadId}`;
+        if (seen.has(key)) {
+          continue;
+        }
+        seen.add(key);
+        const workflowName = await readWorkflowNameFromStartHash(storageRoot, e.start);
+        if (workflowNameFilter !== null && workflowName !== workflowNameFilter) {
+          continue;
+        }
+        out.push({
+          threadId: e.threadId,
+          hash: bundleHash,
+          workflowName,
+          source: "history",
+          activityTs: e.completedAt,
+          head: e.head,
+        });
+      }
     }
   }
 
@@ -145,64 +394,93 @@ export async function listHistoricalThreads(
   return out;
 }
 
+export type LatestThreadTarget = {
+  threadId: string;
+  bundleHash: string;
+  bundleDir: string;
+  threadsJsonPath: string;
+};
+
 /**
- * Picks the thread whose `.data.jsonl` is newest by start-record `timestamp`,
- * falling back to file `mtime` when the timestamp is missing.
- * Tie-breaker: larger `mtime` wins when start timestamps are equal.
+ * Picks the newest thread by StartNode timestamp approximation (`updatedAt` active,
+ * else `completedAt` history), falling back to lexical thread id order.
  */
-export async function findLatestThreadDataPath(
+// biome-ignore lint/complexity/noExcessiveCognitiveComplexity: compares active heads vs history tails
+export async function findLatestThreadBundleTarget(
   storageRoot: string,
-): Promise<{ threadId: string; dataPath: string } | null> {
-  const threads = await listHistoricalThreads(storageRoot, null);
-  if (threads.length === 0) {
-    return null;
-  }
+): Promise<LatestThreadTarget | null> {
+  const hashes = await listBundleHashDirs(storageRoot);
 
   let best: {
     threadId: string;
-    dataPath: string;
-    primary: number;
-    secondary: number;
+    bundleHash: string;
+    bundleDir: string;
+    ts: number;
   } | null = null;
 
-  for (const t of threads) {
-    const dataPath = join(storageRoot, "logs", t.hash, `${t.threadId}.data.jsonl`);
-    let mtimeMs = 0;
+  for (const bundleHash of hashes) {
+    const bundleDir = join(storageRoot, "bundles", bundleHash);
+    let index: ThreadIndex;
     try {
-      const st = await stat(dataPath);
-      mtimeMs = st.mtimeMs;
+      index = await readThreadsIndex(bundleDir);
     } catch {
       continue;
     }
-    const startTs = await readThreadStartTimestampMs(dataPath);
-    const primary = startTs !== null ? startTs : mtimeMs;
-    const secondary = mtimeMs;
-    if (
-      best === null ||
-      primary > best.primary ||
-      (primary === best.primary && secondary > best.secondary)
-    ) {
-      best = { threadId: t.threadId, dataPath, primary, secondary };
+    for (const threadId of Object.keys(index)) {
+      const ent = index[threadId];
+      if (ent === undefined) {
+        continue;
+      }
+      const ts = ent.updatedAt;
+      const cand = { threadId, bundleHash, bundleDir, ts };
+      if (
+        best === null ||
+        cand.ts > best.ts ||
+        (cand.ts === best.ts &&
+          `${cand.bundleHash}/${cand.threadId}` > `${best.bundleHash}/${best.threadId}`)
+      ) {
+        best = cand;
+      }
+    }
+
+    const histDir = join(bundleDir, "history");
+    if (!(await pathExists(histDir))) {
+      continue;
+    }
+    let files: string[];
+    try {
+      files = await readdir(histDir);
+    } catch {
+      continue;
+    }
+    for (const name of files) {
+      if (!name.endsWith(".jsonl")) {
+        continue;
+      }
+      const entries = await parseHistoryFile(join(histDir, name));
+      for (const e of entries) {
+        const ts = e.completedAt;
+        const cand = { threadId: e.threadId, bundleHash, bundleDir, ts };
+        if (
+          best === null ||
+          cand.ts > best.ts ||
+          (cand.ts === best.ts &&
+            `${cand.bundleHash}/${cand.threadId}` > `${best.bundleHash}/${best.threadId}`)
+        ) {
+          best = cand;
+        }
+      }
     }
   }
 
-  return best === null ? null : { threadId: best.threadId, dataPath: best.dataPath };
-}
-
-export async function resolveThreadDataPath(
-  storageRoot: string,
-  threadId: string,
-): Promise<string | null> {
-  const logsRoot = join(storageRoot, "logs");
-  if (!(await pathExists(logsRoot))) {
+  if (best === null) {
     return null;
   }
-  const hashes = await readdir(logsRoot);
-  for (const hash of hashes) {
-    const candidate = join(logsRoot, hash, `${threadId}.data.jsonl`);
-    if (await pathExists(candidate)) {
-      return candidate;
-    }
-  }
-  return null;
+
+  return {
+    threadId: best.threadId,
+    bundleHash: best.bundleHash,
+    bundleDir: best.bundleDir,
+    threadsJsonPath: join(best.bundleDir, "threads.json"),
+  };
 }

packages/cli-workflow/src/worker-spawn.ts

@@ -2,11 +2,11 @@ import { type ChildProcess, spawn } from "node:child_process";
 import { mkdir, readdir, unlink, writeFile } from "node:fs/promises";
 import { createConnection } from "node:net";
 import { join } from "node:path";
-
-import { err, ok, type Result } from "@uncaged/workflow-protocol";
 import { getWorkerHostScriptPath } from "@uncaged/workflow-execute";
+import { err, ok, type Result } from "@uncaged/workflow-protocol";
 
 import { pathExists, readTextFileIfExists } from "./fs-utils.js";
+import { readThreadTerminalFromHead, resolveThreadRecord } from "./thread-scan.js";
 
 export type WorkerCtl = {
   pid: number;
@@ -270,7 +270,25 @@ export async function resolveRunningHashForThread(
   if (!(await pathExists(logsRoot))) {
     return err(`thread not running (no logs dir): ${threadId}`);
   }
-  const hashes = await readdir(logsRoot);
+  const resolved = await resolveThreadRecord(storageRoot, threadId);
+  if (resolved !== null) {
+    const runningPath = join(logsRoot, resolved.bundleHash, `${threadId}.running`);
+    if (!(await pathExists(runningPath))) {
+      return err(`thread not running: ${threadId}`);
+    }
+    const terminal = await readThreadTerminalFromHead(storageRoot, resolved.head);
+    if (terminal.kind === "terminal") {
+      return err(`thread not running: ${threadId}`);
+    }
+    return ok(resolved.bundleHash);
+  }
+
+  let hashes: string[];
+  try {
+    hashes = await readdir(logsRoot);
+  } catch {
+    return err(`thread not running: ${threadId}`);
+  }
   for (const hash of hashes) {
     const runningPath = join(logsRoot, hash, `${threadId}.running`);
     if (await pathExists(runningPath)) {

packages/dashboard/src/api.ts

@@ -1,84 +0,0 @@
-const BASE = "/api";
-
-async function postJson<T>(path: string, body: unknown): Promise<T> {
-  const res = await fetch(`${BASE}${path}`, {
-    method: "POST",
-    headers: { "Content-Type": "application/json" },
-    body: JSON.stringify(body),
-  });
-  if (!res.ok) {
-    const err = (await res.json().catch(() => ({ error: res.statusText }))) as { error: string };
-    throw new Error(err.error || `API ${res.status}`);
-  }
-  return res.json() as Promise<T>;
-}
-
-async function fetchJson<T>(path: string): Promise<T> {
-  const res = await fetch(`${BASE}${path}`);
-  if (!res.ok) {
-    throw new Error(`API ${res.status}: ${path}`);
-  }
-  return res.json() as Promise<T>;
-}
-
-export type WorkflowSummary = {
-  name: string;
-  currentHash: string;
-  versions: number;
-};
-
-export type ThreadSummary = {
-  threadId: string;
-  workflow: string | null;
-  hash: string | null;
-  startedAt: string | null;
-  status: string | null;
-};
-
-export type ThreadRecord = {
-  type: string;
-  role: string | null;
-  content: string | null;
-  timestamp: number | null;
-  [key: string]: unknown;
-};
-
-export function listWorkflows(): Promise<{ workflows: WorkflowSummary[] }> {
-  return fetchJson("/workflows");
-}
-
-export function listThreads(): Promise<{ threads: ThreadSummary[] }> {
-  return fetchJson("/threads");
-}
-
-export function listRunningThreads(): Promise<{ threads: ThreadSummary[] }> {
-  return fetchJson("/threads/running");
-}
-
-export function getThread(id: string): Promise<{ records: ThreadRecord[] }> {
-  return fetchJson(`/threads/${id}`);
-}
-
-export function runThread(
-  workflow: string,
-  prompt: string,
-  maxRounds: number = 10,
-): Promise<{ threadId: string }> {
-  return postJson("/threads", { workflow, prompt, maxRounds });
-}
-
-export function killThread(threadId: string): Promise<{ ok: boolean }> {
-  return postJson(`/threads/${threadId}/kill`, {});
-}
-
-export function pauseThread(threadId: string): Promise<{ ok: boolean }> {
-  return postJson(`/threads/${threadId}/pause`, {});
-}
-
-export function resumeThread(threadId: string): Promise<{ ok: boolean }> {
-  return postJson(`/threads/${threadId}/resume`, {});
-}
-
-export function getHealth(): Promise<{ ok: boolean }> {
-  return fetchJson("/healthz");
-}

packages/dashboard/src/app.tsx

@@ -1,38 +0,0 @@
-import { useState } from "react";
-import { RunDialog } from "./components/run-dialog.tsx";
-import { Sidebar } from "./components/sidebar.tsx";
-import { StatusBar } from "./components/status-bar.tsx";
-import { ThreadDetail } from "./components/thread-detail.tsx";
-import { ThreadList } from "./components/thread-list.tsx";
-import { WorkflowList } from "./components/workflow-list.tsx";
-import { useHashRoute } from "./use-hash-route.ts";
-
-export function App() {
-  const { view, threadId, setView, setThreadId } = useHashRoute();
-  const [showRun, setShowRun] = useState(false);
-
-  return (
-    <div className="flex h-screen">
-      <Sidebar view={view} onViewChange={setView} />
-      <main className="flex-1 overflow-hidden flex flex-col">
-        <StatusBar onRun={() => setShowRun(true)} />
-        <div className="flex-1 overflow-auto p-6">
-          {view === "threads" && threadId === null && <ThreadList onSelect={setThreadId} />}
-          {view === "threads" && threadId !== null && (
-            <ThreadDetail threadId={threadId} onBack={() => setThreadId(null)} />
-          )}
-          {view === "workflows" && <WorkflowList />}
-        </div>
-      </main>
-      {showRun && (
-        <RunDialog
-          onClose={() => setShowRun(false)}
-          onCreated={(id) => {
-            setShowRun(false);
-            setThreadId(id);
-          }}
-        />
-      )}
-    </div>
-  );
-}

packages/dashboard/src/components/sidebar.tsx

@@ -1,43 +0,0 @@
-type Props = {
-  view: "threads" | "workflows";
-  onViewChange: (v: "threads" | "workflows") => void;
-};
-
-export function Sidebar({ view, onViewChange }: Props) {
-  const items = [
-    { key: "threads" as const, label: "Threads", icon: "⚡" },
-    { key: "workflows" as const, label: "Workflows", icon: "📦" },
-  ];
-
-  return (
-    <aside
-      className="w-56 border-r flex flex-col"
-      style={{ borderColor: "var(--color-border)", background: "var(--color-surface)" }}
-    >
-      <div className="p-4 border-b" style={{ borderColor: "var(--color-border)" }}>
-        <h1 className="text-lg font-semibold" style={{ color: "var(--color-accent)" }}>
-          ⚙ Workflow
-        </h1>
-        <p className="text-xs mt-1" style={{ color: "var(--color-text-muted)" }}>
-          Dashboard
-        </p>
-      </div>
-      <nav className="flex-1 p-2 space-y-1">
-        {items.map((item) => (
-          <button
-            type="button"
-            key={item.key}
-            onClick={() => onViewChange(item.key)}
-            className="w-full text-left px-3 py-2 rounded text-sm transition-colors"
-            style={{
-              background: view === item.key ? "var(--color-accent-dim)" : "transparent",
-              color: view === item.key ? "#fff" : "var(--color-text-muted)",
-            }}
-          >
-            {item.icon} {item.label}
-          </button>
-        ))}
-      </nav>
-    </aside>
-  );
-}

packages/dashboard/src/use-hash-route.ts

@@ -1,64 +0,0 @@
-import { useCallback, useEffect, useState } from "react";
-
-type View = "threads" | "workflows";
-
-type HashRoute = {
-  view: View;
-  threadId: string | null;
-};
-
-function parseHash(hash: string): HashRoute {
-  const raw = hash.replace(/^#\/?/, "");
-  if (raw.startsWith("threads/")) {
-    const id = raw.slice("threads/".length);
-    if (id.length > 0) {
-      return { view: "threads", threadId: id };
-    }
-  }
-  if (raw === "workflows") {
-    return { view: "workflows", threadId: null };
-  }
-  return { view: "threads", threadId: null };
-}
-
-function buildHash(route: HashRoute): string {
-  if (route.view === "workflows") {
-    return "#workflows";
-  }
-  if (route.threadId !== null) {
-    return `#threads/${route.threadId}`;
-  }
-  return "#threads";
-}
-
-export function useHashRoute(): {
-  view: View;
-  threadId: string | null;
-  setView: (v: View) => void;
-  setThreadId: (id: string | null) => void;
-} {
-  const [route, setRoute] = useState<HashRoute>(() => parseHash(window.location.hash));
-
-  useEffect(() => {
-    function onHashChange(): void {
-      setRoute(parseHash(window.location.hash));
-    }
-    window.addEventListener("hashchange", onHashChange);
-    return () => window.removeEventListener("hashchange", onHashChange);
-  }, []);
-
-  const navigate = useCallback((next: HashRoute) => {
-    const hash = buildHash(next);
-    window.location.hash = hash;
-    setRoute(next);
-  }, []);
-
-  const setView = useCallback((v: View) => navigate({ view: v, threadId: null }), [navigate]);
-
-  const setThreadId = useCallback(
-    (id: string | null) => navigate({ view: "threads", threadId: id }),
-    [navigate],
-  );
-
-  return { view: route.view, threadId: route.threadId, setView, setThreadId };
-}

packages/workflow-agent-cursor/README.md

@@ -7,10 +7,10 @@ The agent builds a full prompt (system + task + step history via `@uncaged/workf
 ## Install
 
 ```bash
-bun add @uncaged/workflow-agent-cursor @uncaged/workflow @uncaged/workflow-util-agent zod
+bun add @uncaged/workflow-agent-cursor @uncaged/workflow-runtime @uncaged/workflow-util-agent zod
 ```
 
-In this monorepo: `"@uncaged/workflow-agent-cursor": "workspace:*"` plus `workspace:*` for `@uncaged/workflow` and `@uncaged/workflow-util-agent`.
+In this monorepo: `"@uncaged/workflow-agent-cursor": "workspace:*"` plus `workspace:*` for `@uncaged/workflow-runtime` and `@uncaged/workflow-util-agent`, and `zod` ^4.
 
 ## Usage
 
@@ -28,9 +28,8 @@ const agent = createCursorAgent({
 
 | Export | Description |
 |--------|-------------|
-| `createCursorAgent(config)` | Returns `AgentFn` that runs `cursor-agent` with `buildAgentPrompt(ctx)` |
+| `createCursorAgent(config)` | Returns `AgentFn` that runs `cursor-agent` with `buildAgentPrompt(ctx)` from `@uncaged/workflow-util-agent` |
 | `CursorAgentConfig` | `model`, `timeout`, `extract` (must supply workspace path) |
 | `validateCursorAgentConfig` | Config validation result |
-| `buildAgentPrompt` | Re-exported from `@uncaged/workflow-util-agent` |
 
 Requires `cursor-agent` on `PATH` at runtime.

packages/workflow-agent-cursor/__tests__/cursor-agent.test.ts

@@ -1,20 +1,12 @@
 import { describe, expect, test } from "bun:test";
-import type { ExtractContext, ExtractFn } from "@uncaged/workflow-runtime";
-import type * as z from "zod/v4";
 import { createCursorAgent, validateCursorAgentConfig } from "../src/index.js";
 
-const testExtract: ExtractFn = async <T extends Record<string, unknown>>(
-  _schema: z.ZodType<T>,
-  _prompt: string,
-  _ctx: ExtractContext,
-): Promise<T> => ({ workspace: "/tmp" }) as unknown as T;
-
 describe("validateCursorAgentConfig", () => {
   test("accepts valid config", () => {
     const r = validateCursorAgentConfig({
       model: null,
       timeout: 0,
-      extract: testExtract,
+      workspace: "/tmp/test-project",
     });
     expect(r.ok).toBe(true);
   });
@@ -23,11 +15,11 @@ describe("validateCursorAgentConfig", () => {
     const r = validateCursorAgentConfig({
       model: null,
       timeout: 0,
-      extract: null as unknown as ExtractFn,
+      workspace: "",
     });
     expect(r.ok).toBe(false);
     if (!r.ok) {
-      expect(r.error).toContain("extract");
+      expect(r.error).toContain("workspace");
     }
   });
 
@@ -35,7 +27,7 @@ describe("validateCursorAgentConfig", () => {
     const r = validateCursorAgentConfig({
       model: null,
       timeout: -1,
-      extract: testExtract,
+      workspace: "/tmp/test-project",
     });
     expect(r.ok).toBe(false);
   });
@@ -46,7 +38,7 @@ describe("createCursorAgent", () => {
     const agent = createCursorAgent({
       model: null,
       timeout: 0,
-      extract: testExtract,
+      workspace: "/tmp/test-project",
     });
     expect(typeof agent).toBe("function");
   });
@@ -56,7 +48,7 @@ describe("createCursorAgent", () => {
       createCursorAgent({
         model: null,
         timeout: -1,
-        extract: testExtract,
+        workspace: "/tmp/test-project",
       }),
     ).toThrow();
   });

packages/workflow-agent-cursor/pnpm-lock.yaml

@@ -0,0 +1,28 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-runtime':
+        specifier: workspace:*
+        version: link:../workflow-runtime
+      '@uncaged/workflow-util-agent':
+        specifier: workspace:*
+        version: link:../workflow-util-agent
+      zod:
+        specifier: ^4.0.0
+        version: 4.4.3
+
+packages:
+
+  zod@4.4.3:
+    resolution: {integrity: sha512-ytENFjIJFl2UwYglde2jchW2Hwm4GJFLDiSXWdTrJQBIN9Fcyp7n4DhxJEiWNAJMV1/BqWfW/kkg71UDcHJyTQ==}
+
+snapshots:
+
+  zod@4.4.3: {}

packages/workflow-agent-cursor/src/index.ts

@@ -1,20 +1,12 @@
-import type { AgentFn, ExtractContext } from "@uncaged/workflow-runtime";
+import type { AgentFn } from "@uncaged/workflow-runtime";
 import { buildAgentPrompt, type SpawnCliError, spawnCli } from "@uncaged/workflow-util-agent";
-import * as z from "zod/v4";
 
 import type { CursorAgentConfig } from "./types.js";
 import { validateCursorAgentConfig } from "./validate-config.js";
 
-export { buildAgentPrompt } from "@uncaged/workflow-util-agent";
 export type { CursorAgentConfig } from "./types.js";
 export { validateCursorAgentConfig } from "./validate-config.js";
 
-const cursorWorkspaceSchema = z.object({
-  workspace: z
-    .string()
-    .describe("Absolute path to the project/repository directory the agent should work in"),
-});
-
 function throwCursorSpawnError(error: SpawnCliError): never {
   if (error.kind === "non_zero_exit") {
     throw new Error(
@@ -45,15 +37,7 @@ export function createCursorAgent(config: CursorAgentConfig): AgentFn {
   const timeoutMs = config.timeout > 0 ? config.timeout : null;
 
   return async (ctx) => {
-    const extractCtx: ExtractContext = {
-      ...ctx,
-      agentContent: "",
-    };
-    const { workspace } = await config.extract(
-      cursorWorkspaceSchema,
-      "From the thread context, determine the absolute filesystem path where the project/repository is located.",
-      extractCtx,
-    );
+    const workspace = config.workspace;
     const fullPrompt = await buildAgentPrompt(ctx);
     const args = [
       "-p",

packages/workflow-agent-cursor/src/types.ts

@@ -1,7 +1,5 @@
-import type { ExtractFn } from "@uncaged/workflow-runtime";
-
 export type CursorAgentConfig = {
   model: string | null;
   timeout: number;
-  extract: ExtractFn;
+  workspace: string;
 };

packages/workflow-agent-cursor/src/validate-config.ts

@@ -3,8 +3,8 @@ import { err, ok, type Result } from "@uncaged/workflow-runtime";
 import type { CursorAgentConfig } from "./types.js";
 
 export function validateCursorAgentConfig(config: CursorAgentConfig): Result<void, string> {
-  if (typeof config.extract !== "function") {
-    return err("extract must be a function");
+  if (typeof config.workspace !== "string" || config.workspace.length === 0) {
+    return err("workspace must be a non-empty string (absolute path)");
   }
   if (config.timeout < 0) {
     return err("timeout must be a non-negative number (milliseconds); use 0 for no limit");

packages/workflow-agent-hermes/README.md

@@ -7,10 +7,10 @@ The agent composes the same thread-aware prompt as other CLI-backed agents via `
 ## Install
 
 ```bash
-bun add @uncaged/workflow-agent-hermes @uncaged/workflow @uncaged/workflow-util-agent
+bun add @uncaged/workflow-agent-hermes @uncaged/workflow-runtime @uncaged/workflow-util-agent
 ```
 
-In this monorepo: use `workspace:*` for all three `@uncaged/*` packages.
+In this monorepo: use `workspace:*` for `@uncaged/workflow-agent-hermes`, `@uncaged/workflow-runtime`, and `@uncaged/workflow-util-agent`.
 
 ## Usage
 
@@ -30,6 +30,5 @@ const agent = createHermesAgent({
 | `createHermesAgent(config)` | Returns `AgentFn` wrapping `hermes chat -q ...` |
 | `HermesAgentConfig` | `model`, `timeout` |
 | `validateHermesAgentConfig` | Config validation result |
-| `buildAgentPrompt` | Re-exported from `@uncaged/workflow-util-agent` |
 
 Requires `hermes` on `PATH` at runtime.

packages/workflow-agent-hermes/pnpm-lock.yaml

@@ -0,0 +1,16 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-runtime':
+        specifier: workspace:*
+        version: link:../workflow-runtime
+      '@uncaged/workflow-util-agent':
+        specifier: workspace:*
+        version: link:../workflow-util-agent

packages/workflow-agent-hermes/src/index.ts

@@ -6,7 +6,6 @@ import { validateHermesAgentConfig } from "./validate-config.js";
 
 const HERMES_DEFAULT_MAX_TURNS = 90;
 
-export { buildAgentPrompt } from "@uncaged/workflow-util-agent";
 export type { HermesAgentConfig } from "./types.js";
 export { validateHermesAgentConfig } from "./validate-config.js";
 

packages/workflow-agent-llm/README.md

@@ -1,16 +1,16 @@
 # @uncaged/workflow-agent-llm
 
-`AgentFn` adapter that calls an OpenAI-compatible `POST /chat/completions` endpoint using `@uncaged/workflow`’s `LlmProvider` (base URL, API key, model).
+`AgentFn` adapter that calls an OpenAI-compatible `POST /chat/completions` endpoint using `LlmProvider` from `@uncaged/workflow-runtime`.
 
 Single-turn: system text is the current role’s `systemPrompt`, user text is the thread’s initial prompt (`ctx.start.content`). Errors from HTTP, JSON, or empty choices are thrown as `Error` with a JSON payload string.
 
 ## Install
 
 ```bash
-bun add @uncaged/workflow-agent-llm @uncaged/workflow
+bun add @uncaged/workflow-agent-llm @uncaged/workflow-runtime zod
 ```
 
-In this monorepo: `"@uncaged/workflow-agent-llm": "workspace:*"`, `"@uncaged/workflow": "workspace:*"`.
+In this monorepo: `"@uncaged/workflow-agent-llm": "workspace:*"`, `"@uncaged/workflow-runtime": "workspace:*"` (and satisfy `zod` ^4 as required by `@uncaged/workflow-runtime`).
 
 ## Usage
 

packages/workflow-agent-llm/__tests__/create-llm-adapter.test.ts

@@ -8,7 +8,7 @@ function makeCtx(userContent: string): AgentContext {
     start: {
       role: START,
       content: userContent,
-      meta: { maxRounds: 10 },
+      meta: {},
       timestamp: 1,
     },
     depth: 0,

packages/workflow-agent-llm/pnpm-lock.yaml

@@ -0,0 +1,13 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-runtime':
+        specifier: workspace:*
+        version: link:../workflow-runtime

packages/workflow-cas/README.md

@@ -0,0 +1,31 @@
+# @uncaged/workflow-cas
+
+Content-addressable storage implementation, bundle hashing, and Merkle helpers.
+
+## What This Package Does
+
+It implements `CasStore` from `@uncaged/workflow-protocol`, hashes workflow bundle bytes and strings with XXH64, and builds serializable Merkle nodes for thread/step/content payloads used when persisting execution artifacts.
+
+## Key Exports
+
+From `src/index.ts`:
+
+- **CAS:** `createCasStore`
+- **Hash:** `hashString`, `hashWorkflowBundleBytes`
+- **Merkle:** `createContentMerkleNode`, `getContentMerklePayload`, `parseMerkleNode`, `putContentMerkleNode`, `putStepMerkleNode`, `putThreadMerkleNode`, `serializeMerkleNode`
+- **Types:** `CasStore`, `MerkleNode`, `MerkleNodeType`, `StepMerklePayload`, `ThreadMerklePayload`
+
+## Dependencies
+
+- **Workspace:** `@uncaged/workflow-protocol` (`CasStore` contract), `@uncaged/workflow-util`
+- **npm:** `xxhashjs`, `yaml`
+
+## Usage
+
+```typescript
+import { createCasStore, hashWorkflowBundleBytes } from "@uncaged/workflow-cas";
+import { getGlobalCasDir } from "@uncaged/workflow-util";
+
+const store = createCasStore(getGlobalCasDir());
+const hash = await hashWorkflowBundleBytes(esmJsBytes);
+```

packages/workflow-cas/__tests__/collect-refs.test.ts

@@ -0,0 +1,65 @@
+import { describe, expect, test } from "bun:test";
+import type { StateNode } from "@uncaged/workflow-protocol";
+
+import { collectRefs } from "../src/collect-refs.js";
+
+function payload(
+  partial: Partial<StateNode["payload"]> & Pick<StateNode["payload"], "role">,
+): StateNode["payload"] {
+  return {
+    role: partial.role,
+    meta: partial.meta ?? {},
+    start: partial.start ?? "STARTHASH000000000000001",
+    content: partial.content ?? "CONTENTHASH00000000000001",
+    ancestors: partial.ancestors ?? [],
+    compact: partial.compact ?? null,
+    timestamp: partial.timestamp ?? 0,
+  };
+}
+
+describe("collectRefs", () => {
+  test("collects start, content, ancestors, and compact hashes in order", () => {
+    const refs = collectRefs(
+      payload({
+        role: "coder",
+        start: "01START00000000000000001",
+        content: "01CONTENT0000000000000001",
+        ancestors: ["01PARENT0000000000000001", "01GRAND000000000000000001"],
+        compact: "01COMPACT0000000000000001",
+      }),
+    );
+    expect(refs).toEqual([
+      "01START00000000000000001",
+      "01CONTENT0000000000000001",
+      "01PARENT0000000000000001",
+      "01GRAND000000000000000001",
+      "01COMPACT0000000000000001",
+    ]);
+  });
+
+  test("does not collect compact when compact is null", () => {
+    const refs = collectRefs(
+      payload({
+        role: "coder",
+        start: "S1",
+        content: "C1",
+        ancestors: ["A1"],
+        compact: null,
+      }),
+    );
+    expect(refs).toEqual(["S1", "C1", "A1"]);
+  });
+
+  test("returns only start and content when ancestors is empty", () => {
+    const refs = collectRefs(
+      payload({
+        role: "coder",
+        start: "S2",
+        content: "C2",
+        ancestors: [],
+        compact: null,
+      }),
+    );
+    expect(refs).toEqual(["S2", "C2"]);
+  });
+});

packages/workflow-cas/__tests__/reachable.test.ts

@@ -0,0 +1,69 @@
+import { describe, expect, test } from "bun:test";
+import type { CasStore } from "@uncaged/workflow-protocol";
+import { stringify } from "yaml";
+
+import { findReachableHashes } from "../src/reachable.js";
+
+function yamlBlob(refs: readonly string[]): string {
+  return stringify({ type: "node", payload: {}, refs: [...refs] }, { indent: 2 });
+}
+
+function memoryCas(entries: Record<string, string>): CasStore {
+  const map = { ...entries };
+  return {
+    async put(): Promise<string> {
+      throw new Error("memoryCas.put not used in tests");
+    },
+    async get(hash: string): Promise<string | null> {
+      return map[hash] ?? null;
+    },
+    async delete(): Promise<void> {},
+    async list(): Promise<string[]> {
+      return Object.keys(map);
+    },
+  };
+}
+
+describe("findReachableHashes", () => {
+  test("walks refs recursively from a single root", async () => {
+    const cas = memoryCas({
+      R1: yamlBlob(["R2"]),
+      R2: yamlBlob(["R3"]),
+      R3: yamlBlob([]),
+    });
+    const reachable = await findReachableHashes(["R1"], cas);
+    expect([...reachable].sort()).toEqual(["R1", "R2", "R3"]);
+  });
+
+  test("union of reachability from multiple roots", async () => {
+    const cas = memoryCas({
+      A: yamlBlob(["X"]),
+      B: yamlBlob(["Y"]),
+      X: yamlBlob([]),
+      Y: yamlBlob(["Z"]),
+      Z: yamlBlob([]),
+    });
+    const reachable = await findReachableHashes(["A", "B"], cas);
+    expect([...reachable].sort()).toEqual(["A", "B", "X", "Y", "Z"]);
+  });
+
+  test("handles cycles via visited set", async () => {
+    const cas = memoryCas({
+      C1: yamlBlob(["C2"]),
+      C2: yamlBlob(["C1"]),
+    });
+    const reachable = await findReachableHashes(["C1"], cas);
+    expect(reachable.size).toBe(2);
+    expect(reachable.has("C1")).toBe(true);
+    expect(reachable.has("C2")).toBe(true);
+  });
+
+  test("does not throw when a ref points to a missing blob", async () => {
+    const cas = memoryCas({
+      H1: yamlBlob(["MISSINGHASH0000000000001"]),
+    });
+    const reachable = await findReachableHashes(["H1"], cas);
+    expect(reachable.has("H1")).toBe(true);
+    expect(reachable.has("MISSINGHASH0000000000001")).toBe(false);
+  });
+});

packages/workflow-cas/package.json

@@ -2,6 +2,9 @@
   "name": "@uncaged/workflow-cas",
   "version": "0.1.0",
   "type": "module",
+  "scripts": {
+    "test": "bun test"
+  },
   "exports": {
     ".": {
       "types": "./dist/index.d.ts",

packages/workflow-cas/pnpm-lock.yaml

@@ -0,0 +1,75 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-protocol':
+        specifier: workspace:*
+        version: link:../workflow-protocol
+      '@uncaged/workflow-util':
+        specifier: workspace:*
+        version: link:../workflow-util
+      xxhashjs:
+        specifier: ^0.2.2
+        version: 0.2.2
+      yaml:
+        specifier: ^2.7.1
+        version: 2.8.4
+    devDependencies:
+      '@types/bun':
+        specifier: latest
+        version: 1.3.13
+
+packages:
+
+  '@types/bun@1.3.13':
+    resolution: {integrity: sha512-9fqXWk5YIHGGnUau9TEi+qdlTYDAnOj+xLCmSTwXfAIqXr2x4tytJb43E9uCvt09zJURKXwAtkoH4nLQfzeTXw==}
+
+  '@types/node@25.6.2':
+    resolution: {integrity: sha512-sokuT28dxf9JT5Kady1fsXOvI4HVpjZa95NKT5y9PNTIrs2AsobR4GFAA90ZG8M+nxVRLysCXsVj6eGC7Vbrlw==}
+
+  bun-types@1.3.13:
+    resolution: {integrity: sha512-QXKeHLlOLqQX9LgYaHJfzdBaV21T63HhFJnvuRCcjZiaUDpbs5ED1MgxbMra71CsryN/1dAoXuJJJwIv/2drVA==}
+
+  cuint@0.2.2:
+    resolution: {integrity: sha512-d4ZVpCW31eWwCMe1YT3ur7mUDnTXbgwyzaL320DrcRT45rfjYxkt5QWLrmOJ+/UEAI2+fQgKe/fCjR8l4TpRgw==}
+
+  undici-types@7.19.2:
+    resolution: {integrity: sha512-qYVnV5OEm2AW8cJMCpdV20CDyaN3g0AjDlOGf1OW4iaDEx8MwdtChUp4zu4H0VP3nDRF/8RKWH+IPp9uW0YGZg==}
+
+  xxhashjs@0.2.2:
+    resolution: {integrity: sha512-AkTuIuVTET12tpsVIQo+ZU6f/qDmKuRUcjaqR+OIvm+aCBsZ95i7UVY5WJ9TMsSaZ0DA2WxoZ4acu0sPH+OKAw==}
+
+  yaml@2.8.4:
+    resolution: {integrity: sha512-ml/JPOj9fOQK8RNnWojA67GbZ0ApXAUlN2UQclwv2eVgTgn7O9gg9o7paZWKMp4g0H3nTLtS9LVzhkpOFIKzog==}
+    engines: {node: '>= 14.6'}
+    hasBin: true
+
+snapshots:
+
+  '@types/bun@1.3.13':
+    dependencies:
+      bun-types: 1.3.13
+
+  '@types/node@25.6.2':
+    dependencies:
+      undici-types: 7.19.2
+
+  bun-types@1.3.13:
+    dependencies:
+      '@types/node': 25.6.2
+
+  cuint@0.2.2: {}
+
+  undici-types@7.19.2: {}
+
+  xxhashjs@0.2.2:
+    dependencies:
+      cuint: 0.2.2
+
+  yaml@2.8.4: {}

packages/workflow-cas/src/cas.ts

@@ -3,10 +3,14 @@ import { join } from "node:path";
 
 import { hashString } from "./hash.js";
 import { createContentMerkleNode, parseMerkleNode, serializeMerkleNode } from "./merkle.js";
+import { isCasNodeYaml } from "./nodes.js";
 import type { CasStore } from "./types.js";
 
 /** Raw strings become content merkle YAML; already-valid merkle documents pass through. */
 function normalizeCasPutContent(content: string): string {
+  if (isCasNodeYaml(content)) {
+    return content;
+  }
   try {
     parseMerkleNode(content);
     return content;

packages/workflow-cas/src/collect-refs.ts

@@ -0,0 +1,13 @@
+import type { StateNode } from "@uncaged/workflow-protocol";
+
+/** Collects CAS hashes from {@link StateNode} payload fields for GC `refs[]` derivation. */
+export function collectRefs(payload: StateNode["payload"]): string[] {
+  const out: string[] = [payload.start, payload.content];
+  for (const h of payload.ancestors) {
+    out.push(h);
+  }
+  if (payload.compact !== null) {
+    out.push(payload.compact);
+  }
+  return out;
+}

packages/workflow-cas/src/hash.ts

@@ -1,8 +1,6 @@
 import { Buffer } from "node:buffer";
-
-import XXH from "xxhashjs";
-
 import { encodeUint64AsCrockford } from "@uncaged/workflow-util";
+import XXH from "xxhashjs";
 
 function digestToUint64(digest: { toString(radix?: number): string }): bigint {
   const hex = digest.toString(16).padStart(16, "0");

packages/workflow-cas/src/index.ts

@@ -1,4 +1,5 @@
 export { createCasStore } from "./cas.js";
+export { collectRefs } from "./collect-refs.js";
 export { hashString, hashWorkflowBundleBytes } from "./hash.js";
 export {
   createContentMerkleNode,
@@ -9,6 +10,16 @@ export {
   putThreadMerkleNode,
   serializeMerkleNode,
 } from "./merkle.js";
+export type { ParsedCasThreadNode } from "./nodes.js";
+export {
+  isCasNodeYaml,
+  parseCasThreadNode,
+  putContentNodeWithRefs,
+  putStartNode,
+  putStateNode,
+  serializeCasNode,
+} from "./nodes.js";
+export { findReachableHashes } from "./reachable.js";
 export type {
   CasStore,
   MerkleNode,

packages/workflow-cas/src/merkle.ts

@@ -1,8 +1,41 @@
 import { parse, stringify } from "yaml";
 
-import type { CasStore, MerkleNode, StepMerklePayload, ThreadMerklePayload } from "./types.js";
+import type {
+  CasStore,
+  MerkleNode,
+  MerkleNodeType,
+  StepMerklePayload,
+  ThreadMerklePayload,
+} from "./types.js";
+
+function requireStringHashArray(value: unknown, notArrayMessage: string): string[] {
+  if (!Array.isArray(value)) {
+    throw new Error(notArrayMessage);
+  }
+  const out: string[] = [];
+  for (const c of value) {
+    if (typeof c !== "string") {
+      throw new Error("merkle: hash entry must be a string");
+    }
+    out.push(c);
+  }
+  return out;
+}
+
+function edgeListRaw(rec: Record<string, unknown>, type: MerkleNodeType): unknown {
+  if (type === "content") {
+    return rec.refs !== undefined ? rec.refs : rec.children;
+  }
+  return rec.children;
+}
 
 export function serializeMerkleNode(node: MerkleNode): string {
+  if (node.type === "content") {
+    return stringify(
+      { type: node.type, payload: node.payload, refs: node.children },
+      { indent: 2 },
+    );
+  }
   return stringify(
     { type: node.type, payload: node.payload, children: node.children },
     { indent: 2 },
@@ -17,23 +50,18 @@ export function parseMerkleNode(yamlText: string): MerkleNode {
   const rec = raw as Record<string, unknown>;
   const type = rec.type;
   const payload = rec.payload;
-  const children = rec.children;
   if (type !== "content" && type !== "step" && type !== "thread") {
     throw new Error("merkle: invalid or missing type");
   }
   if (typeof payload !== "string" && (payload === null || typeof payload !== "object")) {
     throw new Error("merkle: payload must be a string or object");
   }
-  if (!Array.isArray(children)) {
-    throw new Error("merkle: children must be an array");
-  }
-  const childHashes: string[] = [];
-  for (const c of children) {
-    if (typeof c !== "string") {
-      throw new Error("merkle: child hash must be a string");
-    }
-    childHashes.push(c);
-  }
+
+  const notArrayMsg =
+    type === "content"
+      ? "merkle: content node requires refs or children array"
+      : "merkle: children must be an array";
+  const childHashes = requireStringHashArray(edgeListRaw(rec, type), notArrayMsg);
   return {
     type,
     payload: typeof payload === "string" ? payload : (payload as Record<string, unknown>),
@@ -82,7 +110,12 @@ export async function putContentMerkleNode(store: CasStore, content: string): Pr
   return store.put(content);
 }
 
-/** Loads a CAS blob and returns the payload string for a `content` Merkle node. */
+/**
+ * Loads a CAS blob and returns the payload string for a `content` node.
+ *
+ * Accepts both the legacy `{ type:content, payload, children }` Merkle layout
+ * and the RFC-aligned `{ type:content, payload, refs }` content node layout.
+ */
 export async function getContentMerklePayload(
   store: CasStore,
   hash: string,
@@ -91,9 +124,13 @@ export async function getContentMerklePayload(
   if (yamlText === null) {
     return null;
   }
-  const node = parseMerkleNode(yamlText);
-  if (node.type !== "content" || typeof node.payload !== "string") {
+  const raw = parse(yamlText) as unknown;
+  if (raw === null || typeof raw !== "object") {
     return null;
   }
-  return node.payload;
+  const rec = raw as Record<string, unknown>;
+  if (rec.type !== "content" || typeof rec.payload !== "string") {
+    return null;
+  }
+  return rec.payload;
 }

packages/workflow-cas/src/nodes.ts

@@ -0,0 +1,177 @@
+import type {
+  ContentMerkleNode,
+  StartNode,
+  StartNodePayload,
+  StateNode,
+  StateNodePayload,
+} from "@uncaged/workflow-protocol";
+import { parse, stringify } from "yaml";
+
+import { collectRefs } from "./collect-refs.js";
+import type { CasStore } from "./types.js";
+
+function isRecord(value: unknown): value is Record<string, unknown> {
+  return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+
+function isStartPayload(value: unknown): value is StartNodePayload {
+  if (!isRecord(value)) {
+    return false;
+  }
+  return (
+    typeof value.name === "string" &&
+    typeof value.hash === "string" &&
+    typeof value.depth === "number"
+  );
+}
+
+function isStatePayload(value: unknown): value is StateNodePayload {
+  if (!isRecord(value)) {
+    return false;
+  }
+  const compact = value.compact;
+  if (!(compact === null || typeof compact === "string")) {
+    return false;
+  }
+  const ancestors = value.ancestors;
+  if (!Array.isArray(ancestors) || !ancestors.every((h) => typeof h === "string")) {
+    return false;
+  }
+  const meta = value.meta;
+  if (!isRecord(meta)) {
+    return false;
+  }
+  return (
+    typeof value.role === "string" &&
+    typeof value.start === "string" &&
+    typeof value.content === "string" &&
+    typeof value.timestamp === "number"
+  );
+}
+
+/** Parses a YAML CAS blob into a typed RFC v3 thread node (or legacy content layout with `children`). */
+export function parseCasThreadNode(yamlText: string): ParsedCasThreadNode | null {
+  let raw: unknown;
+  try {
+    raw = parse(yamlText) as unknown;
+  } catch {
+    return null;
+  }
+  if (!isRecord(raw)) {
+    return null;
+  }
+  const type = raw.type;
+  if (type !== "start" && type !== "state" && type !== "content") {
+    return null;
+  }
+
+  let refsRaw: unknown = raw.refs;
+  if (refsRaw === undefined && type === "content") {
+    refsRaw = raw.children;
+  }
+  if (!Array.isArray(refsRaw) || !refsRaw.every((r) => typeof r === "string")) {
+    return null;
+  }
+  const refs = refsRaw as string[];
+
+  if (type === "content") {
+    if (typeof raw.payload !== "string") {
+      return null;
+    }
+    const node: ContentMerkleNode = { type: "content", payload: raw.payload, refs: [...refs] };
+    return { kind: "content", node };
+  }
+
+  if (type === "start") {
+    if (!isStartPayload(raw.payload)) {
+      return null;
+    }
+    const node: StartNode = { type: "start", payload: raw.payload, refs: [...refs] };
+    return { kind: "start", node };
+  }
+
+  if (!isStatePayload(raw.payload)) {
+    return null;
+  }
+  const node: StateNode = { type: "state", payload: raw.payload, refs: [...refs] };
+  return { kind: "state", node };
+}
+
+export type ParsedCasThreadNode =
+  | { kind: "start"; node: StartNode }
+  | { kind: "state"; node: StateNode }
+  | { kind: "content"; node: ContentMerkleNode };
+
+/** YAML-serialize a CAS node carrying `{type, payload, refs}` (RFC v3 thread storage format). */
+export function serializeCasNode(node: StartNode | StateNode | ContentMerkleNode): string {
+  return stringify({ type: node.type, payload: node.payload, refs: node.refs }, { indent: 2 });
+}
+
+/**
+ * Recognizes a YAML CAS blob with the `{type, payload, refs[]}` shape used by
+ * `start` / `state` / `content` thread nodes. Used by {@link createCasStore}
+ * to skip the legacy auto-wrap step when the caller already supplied a
+ * pre-serialized RFC v3 node.
+ */
+export function isCasNodeYaml(content: string): boolean {
+  let raw: unknown;
+  try {
+    raw = parse(content) as unknown;
+  } catch {
+    return false;
+  }
+  if (raw === null || typeof raw !== "object" || Array.isArray(raw)) {
+    return false;
+  }
+  const rec = raw as Record<string, unknown>;
+  if (typeof rec.type !== "string") {
+    return false;
+  }
+  if (!Array.isArray(rec.refs)) {
+    return false;
+  }
+  for (const r of rec.refs) {
+    if (typeof r !== "string") {
+      return false;
+    }
+  }
+  return true;
+}
+
+export async function putStartNode(
+  store: CasStore,
+  payload: StartNode["payload"],
+  promptHash: string,
+): Promise<string> {
+  const node: StartNode = {
+    type: "start",
+    payload,
+    refs: [promptHash],
+  };
+  return store.put(serializeCasNode(node));
+}
+
+export async function putStateNode(
+  store: CasStore,
+  payload: StateNode["payload"],
+): Promise<string> {
+  const node: StateNode = {
+    type: "state",
+    payload,
+    refs: collectRefs(payload),
+  };
+  return store.put(serializeCasNode(node));
+}
+
+export async function putContentNodeWithRefs(
+  store: CasStore,
+  payload: string,
+  refs: readonly string[],
+): Promise<string> {
+  const node: ContentMerkleNode = {
+    type: "content",
+    payload,
+    refs: [...refs],
+  };
+  return store.put(serializeCasNode(node));
+}

packages/workflow-cas/src/reachable.ts

@@ -0,0 +1,58 @@
+import { parse } from "yaml";
+
+import type { CasStore } from "./types.js";
+
+function refsFromBlob(content: string): string[] {
+  try {
+    const raw = parse(content) as unknown;
+    if (raw === null || typeof raw !== "object") {
+      return [];
+    }
+    const rec = raw as Record<string, unknown>;
+    let refs = rec.refs;
+    if (!Array.isArray(refs) && Array.isArray(rec.children)) {
+      refs = rec.children;
+    }
+    if (!Array.isArray(refs)) {
+      return [];
+    }
+    const out: string[] = [];
+    for (const r of refs) {
+      if (typeof r === "string") {
+        out.push(r);
+      }
+    }
+    return out;
+  } catch {
+    return [];
+  }
+}
+
+/** Recursively collects all CAS hashes reachable from `roots` via each blob's `refs[]`. */
+export async function findReachableHashes(
+  roots: readonly string[],
+  cas: CasStore,
+): Promise<ReadonlySet<string>> {
+  const visited = new Set<string>();
+  const stack = [...roots];
+  while (stack.length > 0) {
+    const hash = stack.pop();
+    if (hash === undefined) {
+      break;
+    }
+    if (visited.has(hash)) {
+      continue;
+    }
+    const blob = await cas.get(hash);
+    if (blob === null) {
+      continue;
+    }
+    visited.add(hash);
+    for (const ref of refsFromBlob(blob)) {
+      if (!visited.has(ref)) {
+        stack.push(ref);
+      }
+    }
+  }
+  return visited;
+}

packages/workflow-cas/tsconfig.json

@@ -5,8 +5,5 @@
     "outDir": "dist"
   },
   "include": ["src"],
-  "references": [
-    { "path": "../workflow-protocol" },
-    { "path": "../workflow-util" }
-  ]
+  "references": [{ "path": "../workflow-protocol" }, { "path": "../workflow-util" }]
 }

packages/workflow-dashboard/.env.production

@@ -0,0 +1 @@
+VITE_GATEWAY_URL=https://workflow-gateway.shazhou.workers.dev

packages/workflow-dashboard/package.json

@@ -10,7 +10,9 @@
   },
   "dependencies": {
     "react": "^19.2.6",
-    "react-dom": "^19.2.6"
+    "react-dom": "^19.2.6",
+    "react-markdown": "^10.1.0",
+    "shiki": "^4.0.2"
   },
   "devDependencies": {
     "@tailwindcss/vite": "^4.2.4",

packages/workflow-dashboard/src/api.ts

@@ -0,0 +1,154 @@
+const GATEWAY_URL = import.meta.env.VITE_GATEWAY_URL || "";
+
+export function getApiKey(): string | null {
+  try {
+    return localStorage.getItem("workflow-api-key");
+  } catch {
+    return null;
+  }
+}
+
+export function setApiKey(key: string): void {
+  localStorage.setItem("workflow-api-key", key);
+}
+
+export function clearApiKey(): void {
+  localStorage.removeItem("workflow-api-key");
+}
+
+export function hasApiKey(): boolean {
+  return getApiKey() !== null && getApiKey() !== "";
+}
+
+function authHeaders(): Record<string, string> {
+  const key = getApiKey();
+  if (key) return { Authorization: `Bearer ${key}` };
+  return {};
+}
+
+function agentBase(agent: string): string {
+  if (GATEWAY_URL) {
+    return `${GATEWAY_URL}/api/agents/${agent}`;
+  }
+  // Local dev: proxy via vite, no agent prefix
+  return "/api";
+}
+
+async function postJson<T>(base: string, path: string, body: unknown): Promise<T> {
+  const res = await fetch(`${base}${path}`, {
+    method: "POST",
+    headers: { "Content-Type": "application/json", ...authHeaders() },
+    body: JSON.stringify(body),
+  });
+  if (!res.ok) {
+    const err = (await res.json().catch(() => ({ error: res.statusText }))) as { error: string };
+    throw new Error(err.error || `API ${res.status}`);
+  }
+  return res.json() as Promise<T>;
+}
+
+async function fetchJson<T>(base: string, path: string): Promise<T> {
+  const res = await fetch(`${base}${path}`, { headers: authHeaders() });
+  if (!res.ok) {
+    throw new Error(`API ${res.status}: ${path}`);
+  }
+  return res.json() as Promise<T>;
+}
+
+// ── Endpoint types ──────────────────────────────────────────────────
+
+export type AgentEndpoint = {
+  name: string;
+  url: string;
+  status: string;
+  lastHeartbeat: number;
+};
+
+export type WorkflowSummary = {
+  name: string;
+  currentHash: string;
+  versions: number;
+};
+
+export type ThreadSummary = {
+  threadId: string;
+  workflow: string | null;
+  hash: string | null;
+  startedAt: string | null;
+  status: string | null;
+};
+
+export type ThreadStartRecord = {
+  type: "thread-start";
+  workflow: string;
+  prompt: string | null;
+  threadId: string;
+  status: string;
+  timestamp: null;
+};
+
+export type RoleRecord = {
+  type: "role";
+  role: string;
+  content: string;
+  timestamp: number | null;
+  meta: Record<string, unknown>;
+};
+
+export type WorkflowResultRecord = {
+  type: "workflow-result";
+  returnCode: number;
+  content: string;
+  timestamp: number | null;
+};
+
+export type ThreadRecord = ThreadStartRecord | RoleRecord | WorkflowResultRecord;
+
+// ── Gateway endpoints ───────────────────────────────────────────────
+
+export function listAgents(): Promise<AgentEndpoint[]> {
+  const url = GATEWAY_URL || "";
+  return fetchJson(url, "/api/gateway/endpoints");
+}
+
+// ── Agent-scoped endpoints ──────────────────────────────────────────
+
+export function listWorkflows(agent: string): Promise<{ workflows: WorkflowSummary[] }> {
+  return fetchJson(agentBase(agent), "/workflows");
+}
+
+export function listThreads(agent: string): Promise<{ threads: ThreadSummary[] }> {
+  return fetchJson(agentBase(agent), "/threads");
+}
+
+export function listRunningThreads(agent: string): Promise<{ threads: ThreadSummary[] }> {
+  return fetchJson(agentBase(agent), "/threads/running");
+}
+
+export function getThread(agent: string, id: string): Promise<{ records: ThreadRecord[] }> {
+  return fetchJson(agentBase(agent), `/threads/${id}`);
+}
+
+export function runThread(
+  agent: string,
+  workflow: string,
+  prompt: string,
+): Promise<{ threadId: string }> {
+  return postJson(agentBase(agent), "/threads", { workflow, prompt });
+}
+
+export function killThread(agent: string, threadId: string): Promise<{ ok: boolean }> {
+  return postJson(agentBase(agent), `/threads/${threadId}/kill`, {});
+}
+
+export function pauseThread(agent: string, threadId: string): Promise<{ ok: boolean }> {
+  return postJson(agentBase(agent), `/threads/${threadId}/pause`, {});
+}
+
+export function resumeThread(agent: string, threadId: string): Promise<{ ok: boolean }> {
+  return postJson(agentBase(agent), `/threads/${threadId}/resume`, {});
+}
+
+export function getAgentHealth(agent: string): Promise<{ ok: boolean }> {
+  return fetchJson(agentBase(agent), "/healthz");
+}

packages/workflow-dashboard/src/app.tsx

@@ -0,0 +1,64 @@
+import { useState } from "react";
+import { clearApiKey, hasApiKey } from "./api.ts";
+import { LoginPage } from "./components/login.tsx";
+import { RunDialog } from "./components/run-dialog.tsx";
+import { Sidebar } from "./components/sidebar.tsx";
+import { StatusBar } from "./components/status-bar.tsx";
+import { ThreadDetail } from "./components/thread-detail.tsx";
+import { ThreadList } from "./components/thread-list.tsx";
+import { WorkflowList } from "./components/workflow-list.tsx";
+import { useHashRoute } from "./use-hash-route.ts";
+
+export function App() {
+  const [authed, setAuthed] = useState(hasApiKey());
+  const { view, agent, threadId, setView, setAgent, setThreadId } = useHashRoute();
+  const [showRun, setShowRun] = useState(false);
+
+  if (!authed) {
+    return <LoginPage onLogin={() => setAuthed(true)} />;
+  }
+
+  return (
+    <div className="flex h-screen">
+      <Sidebar
+        view={view}
+        agent={agent}
+        onViewChange={setView}
+        onAgentChange={setAgent}
+        onLogout={() => {
+          clearApiKey();
+          setAuthed(false);
+        }}
+      />
+      <main className="flex-1 overflow-hidden flex flex-col">
+        <StatusBar agent={agent} onRun={() => setShowRun(true)} />
+        <div className="flex-1 overflow-auto p-6">
+          {!agent && (
+            <div className="flex items-center justify-center h-full">
+              <p style={{ color: "var(--color-text-muted)" }}>
+                Select an agent from the sidebar to get started.
+              </p>
+            </div>
+          )}
+          {agent && view === "threads" && threadId === null && (
+            <ThreadList agent={agent} onSelect={setThreadId} />
+          )}
+          {agent && view === "threads" && threadId !== null && (
+            <ThreadDetail agent={agent} threadId={threadId} onBack={() => setThreadId(null)} />
+          )}
+          {agent && view === "workflows" && <WorkflowList agent={agent} />}
+        </div>
+      </main>
+      {showRun && agent && (
+        <RunDialog
+          agent={agent}
+          onClose={() => setShowRun(false)}
+          onCreated={(id) => {
+            setShowRun(false);
+            setThreadId(id);
+          }}
+        />
+      )}
+    </div>
+  );
+}

packages/workflow-dashboard/src/components/login.tsx

@@ -0,0 +1,96 @@
+import { useState } from "react";
+import { setApiKey } from "../api.ts";
+
+type Props = {
+  onLogin: () => void;
+};
+
+export function LoginPage({ onLogin }: Props) {
+  const [key, setKey] = useState("");
+  const [error, setError] = useState<string | null>(null);
+  const [loading, setLoading] = useState(false);
+
+  async function handleSubmit(e: React.FormEvent) {
+    e.preventDefault();
+    if (!key.trim()) return;
+
+    setLoading(true);
+    setError(null);
+
+    // Test the key by hitting the endpoints list
+    const gatewayUrl = import.meta.env.VITE_GATEWAY_URL || "";
+    try {
+      const res = await fetch(`${gatewayUrl}/api/gateway/endpoints`, {
+        headers: { Authorization: `Bearer ${key.trim()}` },
+      });
+      if (res.status === 401) {
+        setError("Invalid API key");
+        setLoading(false);
+        return;
+      }
+      if (!res.ok) {
+        setError(`Server error: ${res.status}`);
+        setLoading(false);
+        return;
+      }
+    } catch (err) {
+      setError(`Connection failed: ${err instanceof Error ? err.message : String(err)}`);
+      setLoading(false);
+      return;
+    }
+
+    setApiKey(key.trim());
+    onLogin();
+  }
+
+  return (
+    <div
+      className="min-h-screen flex items-center justify-center"
+      style={{ background: "var(--color-bg)" }}
+    >
+      <div
+        className="p-8 rounded-lg border w-full max-w-sm"
+        style={{ background: "var(--color-surface)", borderColor: "var(--color-border)" }}
+      >
+        <h1 className="text-xl font-bold mb-1" style={{ color: "var(--color-accent)" }}>
+          ⚙ Workflow Dashboard
+        </h1>
+        <p className="text-sm mb-6" style={{ color: "var(--color-text-muted)" }}>
+          Enter your API key to continue
+        </p>
+        <form onSubmit={handleSubmit}>
+          <input
+            type="password"
+            value={key}
+            onChange={(e) => setKey(e.target.value)}
+            placeholder="API Key"
+            className="w-full px-3 py-2 rounded border text-sm mb-3 outline-none"
+            style={{
+              background: "var(--color-bg)",
+              borderColor: "var(--color-border)",
+              color: "var(--color-text)",
+            }}
+            autoFocus
+          />
+          {error && (
+            <p className="text-xs mb-3" style={{ color: "var(--color-error)" }}>
+              {error}
+            </p>
+          )}
+          <button
+            type="submit"
+            disabled={loading || !key.trim()}
+            className="w-full px-3 py-2 rounded text-sm font-medium"
+            style={{
+              background: "var(--color-accent)",
+              color: "var(--color-bg)",
+              opacity: loading || !key.trim() ? 0.5 : 1,
+            }}
+          >
+            {loading ? "Verifying..." : "Login"}
+          </button>
+        </form>
+      </div>
+    </div>
+  );
+}

packages/workflow-dashboard/src/components/markdown.tsx

@@ -0,0 +1,127 @@
+import { useEffect, useState } from "react";
+import ReactMarkdown from "react-markdown";
+import {
+  type BundledLanguage,
+  type BundledTheme,
+  createHighlighter,
+  type HighlighterGeneric,
+} from "shiki";
+
+let highlighterPromise: Promise<HighlighterGeneric<BundledLanguage, BundledTheme>> | null = null;
+
+const LANGS: BundledLanguage[] = [
+  "typescript",
+  "javascript",
+  "json",
+  "yaml",
+  "bash",
+  "python",
+  "markdown",
+];
+
+function getHighlighter(): Promise<HighlighterGeneric<BundledLanguage, BundledTheme>> {
+  if (highlighterPromise === null) {
+    highlighterPromise = createHighlighter({
+      themes: ["github-dark"],
+      langs: LANGS,
+    });
+  }
+  return highlighterPromise;
+}
+
+function CodeBlock({ className, children }: { className?: string; children?: React.ReactNode }) {
+  const [html, setHtml] = useState<string | null>(null);
+  const code = String(children).replace(/\n$/, "");
+  const lang = className?.replace("language-", "") ?? "text";
+
+  useEffect(() => {
+    let cancelled = false;
+    getHighlighter().then((hl) => {
+      if (cancelled) return;
+      try {
+        const result = hl.codeToHtml(code, { lang, theme: "github-dark" });
+        setHtml(result);
+      } catch {
+        setHtml(null);
+      }
+    });
+    return () => {
+      cancelled = true;
+    };
+  }, [code, lang]);
+
+  if (html !== null) {
+    return (
+      <div
+        className="rounded overflow-x-auto text-xs my-2"
+        // biome-ignore lint/security/noDangerouslySetInnerHtml: shiki output is safe
+        dangerouslySetInnerHTML={{ __html: html }}
+      />
+    );
+  }
+
+  return (
+    <pre
+      className="rounded overflow-x-auto text-xs my-2 p-3"
+      style={{ background: "var(--color-bg)" }}
+    >
+      <code>{code}</code>
+    </pre>
+  );
+}
+
+export function Markdown({ content }: { content: string }) {
+  return (
+    <div className="prose prose-invert prose-sm max-w-none">
+      <ReactMarkdown
+        components={{
+          code({ className, children, ...props }) {
+            const isInline = !className;
+            if (isInline) {
+              return (
+                <code
+                  className="text-xs px-1 py-0.5 rounded"
+                  style={{ background: "var(--color-border)", color: "var(--color-accent)" }}
+                  {...props}
+                >
+                  {children}
+                </code>
+              );
+            }
+            return <CodeBlock className={className}>{children}</CodeBlock>;
+          },
+          p({ children }) {
+            return <p className="my-1.5 leading-relaxed">{children}</p>;
+          },
+          ul({ children }) {
+            return <ul className="list-disc pl-4 my-1.5">{children}</ul>;
+          },
+          ol({ children }) {
+            return <ol className="list-decimal pl-4 my-1.5">{children}</ol>;
+          },
+          h1({ children }) {
+            return <h1 className="text-lg font-bold mt-3 mb-1">{children}</h1>;
+          },
+          h2({ children }) {
+            return <h2 className="text-base font-bold mt-2 mb-1">{children}</h2>;
+          },
+          h3({ children }) {
+            return <h3 className="text-sm font-bold mt-2 mb-1">{children}</h3>;
+          },
+          blockquote({ children }) {
+            return (
+              <blockquote
+                className="border-l-2 pl-3 my-2 text-sm"
+                style={{ borderColor: "var(--color-accent)", color: "var(--color-text-muted)" }}
+              >
+                {children}
+              </blockquote>
+            );
+          },
+        }}
+      >
+        {content}
+      </ReactMarkdown>
+    </div>
+  );
+}

packages/workflow-dashboard/src/components/record-card.tsx

@@ -0,0 +1,126 @@
+import type { RoleRecord, ThreadRecord, ThreadStartRecord, WorkflowResultRecord } from "../api.ts";
+import { Markdown } from "./markdown.tsx";
+
+const ROLE_COLORS: Record<string, string> = {
+  preparer: "#8b5cf6",
+  agent: "#3b82f6",
+  extractor: "#f59e0b",
+};
+
+function roleColor(role: string): string {
+  return ROLE_COLORS[role] ?? "var(--color-accent)";
+}
+
+function formatTime(ts: number | null): string | null {
+  if (ts === null) return null;
+  return new Date(ts).toLocaleTimeString();
+}
+
+function StartCard({ record }: { record: ThreadStartRecord }) {
+  return (
+    <div
+      className="p-4 rounded-lg border"
+      style={{ background: "var(--color-surface)", borderColor: "var(--color-border)" }}
+    >
+      <div className="flex items-center gap-2 mb-2">
+        <span className="text-lg">🚀</span>
+        <span className="font-semibold" style={{ color: "var(--color-accent)" }}>
+          {record.workflow}
+        </span>
+        <span
+          className="text-xs px-2 py-0.5 rounded"
+          style={{
+            background: record.status === "active" ? "var(--color-success)" : "var(--color-border)",
+            color: record.status === "active" ? "var(--color-bg)" : "var(--color-text-muted)",
+          }}
+        >
+          {record.status}
+        </span>
+      </div>
+      {record.prompt !== null && (
+        <div
+          className="mt-2 p-3 rounded text-sm border-l-2"
+          style={{
+            background: "var(--color-bg)",
+            borderColor: "var(--color-accent)",
+            color: "var(--color-text)",
+          }}
+        >
+          <div className="text-xs mb-1" style={{ color: "var(--color-text-muted)" }}>
+            Prompt
+          </div>
+          <Markdown content={record.prompt} />
+        </div>
+      )}
+    </div>
+  );
+}
+
+function RoleMessage({ record }: { record: RoleRecord }) {
+  const color = roleColor(record.role);
+  return (
+    <div
+      className="p-3 rounded-lg border text-sm"
+      style={{ background: "var(--color-surface)", borderColor: "var(--color-border)" }}
+    >
+      <div className="flex items-center gap-2 mb-2">
+        <span
+          className="text-xs px-2 py-0.5 rounded font-mono font-medium"
+          style={{ background: color, color: "#fff" }}
+        >
+          {record.role}
+        </span>
+        {formatTime(record.timestamp) !== null && (
+          <span className="text-xs ml-auto" style={{ color: "var(--color-text-muted)" }}>
+            {formatTime(record.timestamp)}
+          </span>
+        )}
+      </div>
+      <Markdown content={record.content} />
+    </div>
+  );
+}
+
+function ResultCard({ record }: { record: WorkflowResultRecord }) {
+  const success = record.returnCode === 0;
+  return (
+    <div
+      className="p-4 rounded-lg border"
+      style={{
+        background: "var(--color-surface)",
+        borderColor: success ? "var(--color-success)" : "var(--color-error)",
+      }}
+    >
+      <div className="flex items-center gap-2 mb-2">
+        <span className="text-lg">{success ? "✅" : "❌"}</span>
+        <span className="font-semibold text-sm">{success ? "Completed" : "Failed"}</span>
+        <span
+          className="text-xs px-2 py-0.5 rounded font-mono"
+          style={{
+            background: success ? "var(--color-success)" : "var(--color-error)",
+            color: "#fff",
+          }}
+        >
+          exit {record.returnCode}
+        </span>
+        {formatTime(record.timestamp) !== null && (
+          <span className="text-xs ml-auto" style={{ color: "var(--color-text-muted)" }}>
+            {formatTime(record.timestamp)}
+          </span>
+        )}
+      </div>
+      <Markdown content={record.content} />
+    </div>
+  );
+}
+
+export function RecordCard({ record }: { record: ThreadRecord }) {
+  switch (record.type) {
+    case "thread-start":
+      return <StartCard record={record} />;
+    case "role":
+      return <RoleMessage record={record} />;
+    case "workflow-result":
+      return <ResultCard record={record} />;
+  }
+}

packages/workflow-dashboard/src/components/run-dialog.tsx

@@ -3,15 +3,15 @@ import { listWorkflows, runThread } from "../api.ts";
 import { useFetch } from "../hooks.ts";
 
 type Props = {
+  agent: string;
   onClose: () => void;
   onCreated: (threadId: string) => void;
 };
 
-export function RunDialog({ onClose, onCreated }: Props) {
-  const workflows = useFetch(() => listWorkflows(), []);
+export function RunDialog({ agent, onClose, onCreated }: Props) {
+  const workflows = useFetch(() => listWorkflows(agent), [agent]);
   const [workflow, setWorkflow] = useState("");
   const [prompt, setPrompt] = useState("");
-  const [maxRounds, setMaxRounds] = useState(10);
   const [submitting, setSubmitting] = useState(false);
   const [error, setError] = useState<string | null>(null);
 
@@ -21,7 +21,7 @@ export function RunDialog({ onClose, onCreated }: Props) {
     setSubmitting(true);
     setError(null);
     try {
-      const result = await runThread(workflow, prompt, maxRounds);
+      const result = await runThread(agent, workflow, prompt);
       onCreated(result.threadId);
     } catch (err) {
       setError(err instanceof Error ? err.message : String(err));
@@ -38,7 +38,7 @@ export function RunDialog({ onClose, onCreated }: Props) {
         className="w-full max-w-lg p-6 rounded-lg border"
         style={{ background: "var(--color-surface)", borderColor: "var(--color-border)" }}
       >
-        <h3 className="text-lg font-semibold mb-4">Run Thread</h3>
+        <h3 className="text-lg font-semibold mb-4">Run Thread on {agent}</h3>
         <form onSubmit={handleSubmit} className="space-y-4">
           <div>
             <label
@@ -90,29 +90,6 @@ export function RunDialog({ onClose, onCreated }: Props) {
               placeholder="Enter the task prompt..."
             />
           </div>
-          <div>
-            <label
-              htmlFor="run-max-rounds"
-              className="text-sm block mb-1"
-              style={{ color: "var(--color-text-muted)" }}
-            >
-              Max Rounds
-            </label>
-            <input
-              id="run-max-rounds"
-              type="number"
-              value={maxRounds}
-              onChange={(e) => setMaxRounds(Number(e.target.value))}
-              min={1}
-              max={100}
-              className="w-24 px-3 py-2 rounded border text-sm"
-              style={{
-                background: "var(--color-bg)",
-                borderColor: "var(--color-border)",
-                color: "var(--color-text)",
-              }}
-            />
-          </div>
           {error && (
             <p className="text-sm" style={{ color: "var(--color-error)" }}>
               {error}

packages/workflow-dashboard/src/components/sidebar.tsx

@@ -0,0 +1,110 @@
+import { useEffect } from "react";
+import type { AgentEndpoint } from "../api.ts";
+import { listAgents } from "../api.ts";
+import { useFetch } from "../hooks.ts";
+
+type Props = {
+  view: "threads" | "workflows";
+  agent: string | null;
+  onViewChange: (v: "threads" | "workflows") => void;
+  onAgentChange: (a: string | null) => void;
+  onLogout: () => void;
+};
+
+export function Sidebar({ view, agent, onViewChange, onAgentChange, onLogout }: Props) {
+  const { status, data } = useFetch(() => listAgents(), []);
+
+  const agents: AgentEndpoint[] = status === "ok" ? data : [];
+
+  // Auto-select first agent when none is selected
+  useEffect(() => {
+    if (agent === null && agents.length > 0) {
+      onAgentChange(agents[0].name);
+    }
+  }, [agent, agents, onAgentChange]);
+
+  const viewItems = [
+    { key: "threads" as const, label: "Threads", icon: "⚡" },
+    { key: "workflows" as const, label: "Workflows", icon: "📦" },
+  ];
+
+  return (
+    <aside
+      className="w-56 border-r flex flex-col"
+      style={{ borderColor: "var(--color-border)", background: "var(--color-surface)" }}
+    >
+      <div className="p-4 border-b" style={{ borderColor: "var(--color-border)" }}>
+        <h1 className="text-lg font-semibold" style={{ color: "var(--color-accent)" }}>
+          ⚙ Workflow
+        </h1>
+        <p className="text-xs mt-1" style={{ color: "var(--color-text-muted)" }}>
+          Dashboard
+        </p>
+      </div>
+
+      {/* Agent selector */}
+      <div className="px-4 py-3 border-b" style={{ borderColor: "var(--color-border)" }}>
+        <label
+          className="block text-xs font-medium mb-1"
+          style={{ color: "var(--color-text-muted)" }}
+          htmlFor="agent-select"
+        >
+          Agent
+        </label>
+        <select
+          id="agent-select"
+          className="w-full rounded px-2 py-1.5 text-xs"
+          style={{
+            background: "var(--color-bg)",
+            color: "var(--color-text)",
+            border: "1px solid var(--color-border)",
+          }}
+          value={agent ?? ""}
+          onChange={(e) => onAgentChange(e.target.value || null)}
+          disabled={status === "loading"}
+        >
+          {status === "loading" ? (
+            <option value="">Loading…</option>
+          ) : agents.length === 0 ? (
+            <option value="">No agents online</option>
+          ) : (
+            agents.map((a) => (
+              <option key={a.name} value={a.name}>
+                {a.status === "online" ? "🟢" : "🔴"} {a.name}
+              </option>
+            ))
+          )}
+        </select>
+      </div>
+
+      {/* View navigation */}
+      <nav className="flex-1 p-2 space-y-1">
+        {viewItems.map((item) => (
+          <button
+            type="button"
+            key={item.key}
+            onClick={() => onViewChange(item.key)}
+            className="w-full text-left px-3 py-2 rounded text-sm transition-colors"
+            style={{
+              background: view === item.key ? "var(--color-accent-dim)" : "transparent",
+              color: view === item.key ? "#fff" : "var(--color-text-muted)",
+            }}
+          >
+            {item.icon} {item.label}
+          </button>
+        ))}
+      </nav>
+
+      <div className="p-2 border-t" style={{ borderColor: "var(--color-border)" }}>
+        <button
+          type="button"
+          onClick={onLogout}
+          className="w-full text-left px-3 py-2 rounded text-xs transition-colors"
+          style={{ color: "var(--color-text-muted)" }}
+        >
+          🚪 Logout
+        </button>
+      </div>
+    </aside>
+  );
+}

packages/workflow-dashboard/src/components/status-bar.tsx

@@ -1,9 +1,10 @@
 import { useCallback, useEffect, useRef, useState } from "react";
-import { getHealth } from "../api.ts";
+import { getAgentHealth } from "../api.ts";
 
 type HealthStatus = "connected" | "disconnected" | "reconnecting";
 
 type Props = {
+  agent: string | null;
   onRun: () => void;
 };
 
@@ -17,13 +18,17 @@ function statusLabel(status: HealthStatus): { text: string; color: string } {
   return { text: "● Offline", color: "var(--color-error)" };
 }
 
-export function StatusBar({ onRun }: Props) {
+export function StatusBar({ agent, onRun }: Props) {
   const [status, setStatus] = useState<HealthStatus>("disconnected");
   const wasConnectedRef = useRef(false);
 
   const checkHealth = useCallback(async () => {
+    if (!agent) {
+      setStatus("disconnected");
+      return;
+    }
     try {
-      await getHealth();
+      await getAgentHealth(agent);
       wasConnectedRef.current = true;
       setStatus("connected");
     } catch {
@@ -33,9 +38,11 @@ export function StatusBar({ onRun }: Props) {
         setStatus("disconnected");
       }
     }
-  }, []);
+  }, [agent]);
 
   useEffect(() => {
+    wasConnectedRef.current = false;
+    setStatus("disconnected");
     checkHealth();
     const interval = setInterval(checkHealth, 10_000);
     return () => clearInterval(interval);
@@ -49,12 +56,19 @@ export function StatusBar({ onRun }: Props) {
       style={{ borderColor: "var(--color-border)", background: "var(--color-surface)" }}
     >
       <div className="flex items-center gap-4">
-        <span style={{ color: "var(--color-text-muted)" }}>Local API: 127.0.0.1:7860</span>
+        <span style={{ color: "var(--color-text-muted)" }}>
+          {agent ? `Agent: ${agent}` : "No agent selected"}
+        </span>
         <button
           type="button"
           onClick={onRun}
+          disabled={!agent}
           className="px-3 py-1 rounded text-xs font-medium"
-          style={{ background: "var(--color-accent)", color: "#fff" }}
+          style={{
+            background: agent ? "var(--color-accent)" : "var(--color-border)",
+            color: "#fff",
+            opacity: agent ? 1 : 0.5,
+          }}
         >
           ▶ Run Thread
         </button>

packages/workflow-dashboard/src/components/thread-detail.tsx

@@ -2,15 +2,17 @@ import { useEffect, useRef, useState } from "react";
 import { getThread, killThread, pauseThread, resumeThread } from "../api.ts";
 import { useFetch } from "../hooks.ts";
 import { useSSE } from "../use-sse.ts";
+import { RecordCard } from "./record-card.tsx";
 
 type Props = {
+  agent: string;
   threadId: string;
   onBack: () => void;
 };
 
-export function ThreadDetail({ threadId, onBack }: Props) {
-  const sse = useSSE(threadId);
-  const { status, data, error } = useFetch(() => getThread(threadId), [threadId]);
+export function ThreadDetail({ agent, threadId, onBack }: Props) {
+  const sse = useSSE(agent, threadId);
+  const { status, data, error } = useFetch(() => getThread(agent, threadId), [agent, threadId]);
   const [actionStatus, setActionStatus] = useState<string | null>(null);
   const recordsEndRef = useRef<HTMLDivElement>(null);
 
@@ -30,7 +32,7 @@ export function ThreadDetail({ threadId, onBack }: Props) {
     setActionStatus(`${action}ing...`);
     try {
       const fn = action === "kill" ? killThread : action === "pause" ? pauseThread : resumeThread;
-      await fn(threadId);
+      await fn(agent, threadId);
       setActionStatus(`${action} sent ✓`);
     } catch (e) {
       setActionStatus(`${action} failed: ${e instanceof Error ? e.message : String(e)}`);
@@ -78,7 +80,7 @@ export function ThreadDetail({ threadId, onBack }: Props) {
 
       <h2 className="text-xl font-semibold mb-2 font-mono flex items-center gap-2 flex-wrap">
         <span>{threadId}</span>
-        {sse.connected && (
+        {sse.connected && !sse.completed && (
           <span
             className="text-xs font-medium px-2 py-0.5 rounded"
             style={{ background: "var(--color-success)", color: "var(--color-bg)" }}
@@ -101,39 +103,8 @@ export function ThreadDetail({ threadId, onBack }: Props) {
       )}
       {(status === "ok" || liveActive || records.length > 0) && (
         <div className="space-y-3">
-          {records.map((r) => (
-            <div
-              key={`${threadId}-${r.type}-${String(r.timestamp)}-${r.role ?? ""}-${r.content ?? ""}`}
-              className="p-3 rounded border text-sm"
-              style={{ background: "var(--color-surface)", borderColor: "var(--color-border)" }}
-            >
-              <div className="flex items-center gap-2 mb-1">
-                <span
-                  className="text-xs px-1.5 py-0.5 rounded font-mono"
-                  style={{ background: "var(--color-border)", color: "var(--color-accent)" }}
-                >
-                  {r.type}
-                </span>
-                {r.role && (
-                  <span className="text-xs" style={{ color: "var(--color-text-muted)" }}>
-                    {r.role}
-                  </span>
-                )}
-                {r.timestamp !== null && (
-                  <span className="text-xs ml-auto" style={{ color: "var(--color-text-muted)" }}>
-                    {new Date(r.timestamp).toLocaleTimeString()}
-                  </span>
-                )}
-              </div>
-              {r.content && (
-                <pre
-                  className="whitespace-pre-wrap text-xs mt-1"
-                  style={{ color: "var(--color-text)" }}
-                >
-                  {typeof r.content === "string" ? r.content : JSON.stringify(r.content, null, 2)}
-                </pre>
-              )}
-            </div>
+          {records.map((r, i) => (
+            <RecordCard key={`${threadId}-${i}`} record={r} />
           ))}
           <div ref={recordsEndRef} aria-hidden />
         </div>

packages/workflow-dashboard/src/components/thread-list.tsx

@@ -2,11 +2,12 @@ import { listThreads } from "../api.ts";
 import { useFetch } from "../hooks.ts";
 
 type Props = {
+  agent: string;
   onSelect: (id: string) => void;
 };
 
-export function ThreadList({ onSelect }: Props) {
-  const { status, data, error } = useFetch(() => listThreads(), []);
+export function ThreadList({ agent, onSelect }: Props) {
+  const { status, data, error } = useFetch(() => listThreads(agent), [agent]);
 
   if (status === "loading")
     return <p style={{ color: "var(--color-text-muted)" }}>Loading threads...</p>;

packages/workflow-dashboard/src/components/workflow-list.tsx

@@ -1,8 +1,12 @@
 import { listWorkflows } from "../api.ts";
 import { useFetch } from "../hooks.ts";
 
-export function WorkflowList() {
-  const { status, data, error } = useFetch(() => listWorkflows(), []);
+type Props = {
+  agent: string;
+};
+
+export function WorkflowList({ agent }: Props) {
+  const { status, data, error } = useFetch(() => listWorkflows(agent), [agent]);
 
   if (status === "loading")
     return <p style={{ color: "var(--color-text-muted)" }}>Loading workflows...</p>;

packages/workflow-dashboard/src/use-hash-route.ts

@@ -0,0 +1,92 @@
+import { useCallback, useEffect, useState } from "react";
+
+type View = "threads" | "workflows";
+
+type HashRoute = {
+  view: View;
+  agent: string | null;
+  threadId: string | null;
+};
+
+function parseHash(hash: string): HashRoute {
+  const raw = hash.replace(/^#\/?/, "");
+  // Format: #agent/threads/id or #agent/workflows or #threads or #workflows
+  const parts = raw.split("/");
+
+  // Check if first part is a known view
+  if (parts[0] === "threads" || parts[0] === "workflows") {
+    return {
+      view: parts[0] as View,
+      agent: null,
+      threadId: parts[0] === "threads" && parts.length > 1 ? parts.slice(1).join("/") : null,
+    };
+  }
+
+  // First part is agent name
+  const agent = parts[0] || null;
+  const viewPart = parts[1] ?? "threads";
+  const view: View = viewPart === "workflows" ? "workflows" : "threads";
+  const threadId = view === "threads" && parts.length > 2 ? parts.slice(2).join("/") : null;
+
+  return { view, agent, threadId };
+}
+
+function buildHash(route: HashRoute): string {
+  const prefix = route.agent ? `${route.agent}/` : "";
+  if (route.view === "workflows") {
+    return `#${prefix}workflows`;
+  }
+  if (route.threadId !== null) {
+    return `#${prefix}threads/${route.threadId}`;
+  }
+  return `#${prefix}threads`;
+}
+
+export function useHashRoute(): {
+  view: View;
+  agent: string | null;
+  threadId: string | null;
+  setView: (v: View) => void;
+  setAgent: (a: string | null) => void;
+  setThreadId: (id: string | null) => void;
+} {
+  const [route, setRoute] = useState<HashRoute>(() => parseHash(window.location.hash));
+
+  useEffect(() => {
+    function onHashChange(): void {
+      setRoute(parseHash(window.location.hash));
+    }
+    window.addEventListener("hashchange", onHashChange);
+    return () => window.removeEventListener("hashchange", onHashChange);
+  }, []);
+
+  const navigate = useCallback((next: HashRoute) => {
+    const hash = buildHash(next);
+    window.location.hash = hash;
+    setRoute(next);
+  }, []);
+
+  const setView = useCallback(
+    (v: View) => navigate({ view: v, agent: route.agent, threadId: null }),
+    [navigate, route.agent],
+  );
+
+  const setAgent = useCallback(
+    (a: string | null) => navigate({ view: route.view, agent: a, threadId: null }),
+    [navigate, route.view],
+  );
+
+  const setThreadId = useCallback(
+    (id: string | null) => navigate({ view: "threads", agent: route.agent, threadId: id }),
+    [navigate, route.agent],
+  );
+
+  return {
+    view: route.view,
+    agent: route.agent,
+    threadId: route.threadId,
+    setView,
+    setAgent,
+    setThreadId,
+  };
+}

packages/workflow-dashboard/src/use-sse.ts

@@ -8,6 +8,7 @@ import {
 } from "react";
 
 import type { ThreadRecord } from "./api.ts";
+import { getApiKey } from "./api.ts";
 
 export type UseSSEReturn = {
   records: ThreadRecord[];
@@ -56,7 +57,17 @@ function handleRecordEvent(ev: Event, ctx: RecordEventContext): void {
   ctx.cleanupEs();
 }
 
-export function useSSE(threadId: string | null): UseSSEReturn {
+function sseUrl(agent: string, threadId: string): string {
+  const gatewayUrl = import.meta.env.VITE_GATEWAY_URL || "";
+  const key = getApiKey();
+  const keyParam = key ? `?key=${encodeURIComponent(key)}` : "";
+  if (gatewayUrl) {
+    return `${gatewayUrl}/api/${agent}/threads/${encodeURIComponent(threadId)}/live${keyParam}`;
+  }
+  return `/api/threads/${encodeURIComponent(threadId)}/live`;
+}
+
+export function useSSE(agent: string | null, threadId: string | null): UseSSEReturn {
   const [records, setRecords] = useState<ThreadRecord[]>([]);
   const [connected, setConnected] = useState(false);
   const [completed, setCompleted] = useState(false);
@@ -65,7 +76,7 @@ export function useSSE(threadId: string | null): UseSSEReturn {
   const reconnectAttemptsRef = useRef(0);
 
   useEffect(() => {
-    if (threadId === null) {
+    if (threadId === null || agent === null) {
       completedRef.current = false;
       reconnectAttemptsRef.current = 0;
       setRecords([]);
@@ -75,6 +86,7 @@ export function useSSE(threadId: string | null): UseSSEReturn {
     }
 
     const tid = threadId;
+    const agentName = agent;
 
     completedRef.current = false;
     reconnectAttemptsRef.current = 0;
@@ -113,7 +125,7 @@ export function useSSE(threadId: string | null): UseSSEReturn {
       }
 
       cleanupEs();
-      const url = `/api/threads/${encodeURIComponent(tid)}/live`;
+      const url = sseUrl(agentName, tid);
       es = new EventSource(url);
 
       es.onopen = () => {
@@ -136,6 +148,16 @@ export function useSSE(threadId: string | null): UseSSEReturn {
         }),
       );
 
+      es.addEventListener("done", () => {
+        if (cancelled) {
+          return;
+        }
+        completedRef.current = true;
+        setCompleted(true);
+        setConnected(false);
+        cleanupEs();
+      });
+
       es.onerror = () => {
         if (cancelled || completedRef.current) {
           return;
@@ -155,7 +177,7 @@ export function useSSE(threadId: string | null): UseSSEReturn {
       }
       cleanupEs();
     };
-  }, [threadId]);
+  }, [agent, threadId]);
 
   return { records, connected, completed };
 }

packages/workflow-execute/README.md

@@ -0,0 +1,33 @@
+# @uncaged/workflow-execute
+
+Thread engine: execution, fork/GC, extract pipeline, supervisor/worker wiring, and workflow-as-agent.
+
+## What This Package Does
+
+It runs `WorkflowFn` generators against disk-backed threads, integrates CAS and registry-backed extract (`createExtract`), coordinates LLM tool usage via `@uncaged/workflow-reactor`, handles fork plans and garbage collection, and exposes `workflowAsAgent` for nesting workflows.
+
+## Key Exports
+
+From `src/index.ts`:
+
+- **Engine:** `createWorkflow` (engine-local re-export), `executeThread`, `getWorkerHostScriptPath`
+- **Fork / parse:** `buildForkPlan`, `parseThreadDataJsonl`, `selectForkHistoricalSteps`, `tryParseRoleStepRecord`, `tryParseWorkflowResultRecord`
+- **GC / pause:** `garbageCollectCas`, `createThreadPauseGate`
+- **Engine types:** `ExecuteThreadIo`, `ExecuteThreadOptions`, `ForkHistoricalStep`, `ForkPlan`, `GcResult`, `ParsedThreadStartRecord`, `PrefilledDiskStep`, `SupervisorDecision`, `ThreadPauseGate`
+- **Extract:** `buildExtractUserContent`, `createExtract`, `extractFunctionToolFromZodSchema`, `llmErrorToCause`, `llmExtract`, types `ExtractFn`, `ExtractThreadContext`, `LlmError`, `LlmExtractArgs`
+- **Agent composition:** `workflowAsAgent`, `WorkflowAsAgentOptions`
+
+## Dependencies
+
+- **Workspace:** `@uncaged/workflow-protocol`, `@uncaged/workflow-runtime`, `@uncaged/workflow-util`, `@uncaged/workflow-cas`, `@uncaged/workflow-reactor`, `@uncaged/workflow-register`
+- **npm:** `yaml`
+- **Peer:** `zod` ^4
+
+`@uncaged/workflow-reactor` is used for LLM-backed extract and supervisor flows (`extract-fn.ts`, `supervisor.ts`).
+
+## Usage
+
+```typescript
+import { executeThread } from "@uncaged/workflow-execute";
+// Typical callers are CLI/tests that supply ExecuteThreadIo (paths, CAS, abort, logger, …).
+```

packages/workflow-execute/__tests__/engine.test.ts

@@ -0,0 +1,316 @@
+import { afterEach, beforeEach, describe, expect, test } from "bun:test";
+import { mkdir, mkdtemp, readFile, rm, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { createCasStore } from "@uncaged/workflow-cas";
+
+import type {
+  RoleOutput,
+  ThreadContext,
+  WorkflowCompletion,
+  WorkflowFn,
+  WorkflowRuntime,
+} from "@uncaged/workflow-runtime";
+import { parse as parseYaml } from "yaml";
+
+import { executeThread } from "../src/engine/engine.js";
+import type { ExecuteThreadIo, ExecuteThreadOptions } from "../src/engine/types.js";
+
+const TEST_REGISTRY_YAML = `config:
+  maxDepth: 3
+  supervisorInterval: 0
+  providers:
+    stub:
+      baseUrl: http://127.0.0.1:9
+      apiKey: test
+  models:
+    default: stub/m
+workflows: {}
+`;
+
+function noLogger(): (tag: string, content: string) => void {
+  return () => {};
+}
+
+function makeOptions(overrides: Partial<ExecuteThreadOptions>): ExecuteThreadOptions {
+  return {
+    depth: 0,
+    signal: new AbortController().signal,
+    awaitAfterEachYield: async () => {},
+    forkSourceThreadId: null,
+    prefilledDiskSteps: null,
+    forkContinuation: null,
+    replayTimestamps: null,
+    storageRoot: "/tmp/never",
+    ...overrides,
+  };
+}
+
+async function setupStorage(): Promise<{
+  storageRoot: string;
+  casDir: string;
+  bundleHash: string;
+  bundleDir: string;
+}> {
+  const storageRoot = await mkdtemp(join(tmpdir(), "uncaged-wf-engine-"));
+  await writeFile(join(storageRoot, "workflow.yaml"), TEST_REGISTRY_YAML, "utf8");
+  const casDir = join(storageRoot, "cas");
+  await mkdir(casDir, { recursive: true });
+  const bundleHash = "TESTHASH00001";
+  const bundleDir = join(storageRoot, "bundles", bundleHash);
+  return { storageRoot, casDir, bundleHash, bundleDir };
+}
+
+function readCasNode(casDir: string, hash: string): Record<string, unknown> {
+  const text = require("node:fs").readFileSync(join(casDir, `${hash}.txt`), "utf8") as string;
+  return parseYaml(text) as Record<string, unknown>;
+}
+
+describe("executeThread (Phase 2 — CAS thread storage)", () => {
+  let storageRoot: string;
+  let casDir: string;
+  let bundleHash: string;
+  let bundleDir: string;
+
+  beforeEach(async () => {
+    const setup = await setupStorage();
+    storageRoot = setup.storageRoot;
+    casDir = setup.casDir;
+    bundleHash = setup.bundleHash;
+    bundleDir = setup.bundleDir;
+  });
+
+  afterEach(async () => {
+    await rm(storageRoot, { recursive: true, force: true });
+  });
+
+  test("writes a StartNode whose refs[0] is the prompt CAS hash", async () => {
+    const cas = createCasStore(casDir);
+
+    // biome-ignore lint/correctness/useYield: deliberately empty generator — exercises the start/end path with no role steps
+    const wf: WorkflowFn = async function* (
+      _thread: ThreadContext,
+      _runtime: WorkflowRuntime,
+    ): AsyncGenerator<RoleOutput, WorkflowCompletion> {
+      return { returnCode: 0, summary: "no-op" };
+    };
+
+    const io: ExecuteThreadIo = {
+      threadId: "T01",
+      hash: bundleHash,
+      infoJsonlPath: join(storageRoot, "logs", bundleHash, "T01.info.jsonl"),
+      cas,
+    };
+
+    const result = await executeThread(
+      wf,
+      "demo",
+      { prompt: "hello", steps: [] },
+      makeOptions({ storageRoot }),
+      io,
+      noLogger(),
+    );
+
+    expect(result.returnCode).toBe(0);
+
+    const historyText = await readFile(
+      (await import("node:fs/promises")).readdir ? await firstHistoryFile(bundleDir) : "",
+      "utf8",
+    );
+    const histLine = historyText.trim().split("\n")[0] ?? "";
+    const histEntry = JSON.parse(histLine) as Record<string, unknown>;
+    expect(histEntry.threadId).toBe("T01");
+
+    const startHash = histEntry.start as string;
+    const startNode = readCasNode(casDir, startHash);
+    expect(startNode.type).toBe("start");
+    expect((startNode.payload as Record<string, unknown>).name).toBe("demo");
+    expect((startNode.payload as Record<string, unknown>).hash).toBe(bundleHash);
+
+    const refs = startNode.refs as string[];
+    expect(refs.length).toBe(1);
+
+    const promptBlob = await cas.get(refs[0] ?? "");
+    expect(promptBlob).not.toBeNull();
+    const promptParsed = parseYaml(promptBlob ?? "") as Record<string, unknown>;
+    expect(promptParsed.payload).toBe("hello");
+  });
+
+  test("each role yield produces a chained StateNode and updates threads.json head", async () => {
+    const cas = createCasStore(casDir);
+
+    const wf: WorkflowFn = async function* (
+      _thread: ThreadContext,
+      runtime: WorkflowRuntime,
+    ): AsyncGenerator<RoleOutput, WorkflowCompletion> {
+      const h1 = await runtime.cas.put("plan-text");
+      yield { role: "planner", contentHash: h1, meta: { plan: 1 }, refs: [h1] };
+      const h2 = await runtime.cas.put("code-text");
+      yield { role: "coder", contentHash: h2, meta: { diff: "y" }, refs: [h2] };
+      return { returnCode: 0, summary: "done" };
+    };
+
+    const io: ExecuteThreadIo = {
+      threadId: "T02",
+      hash: bundleHash,
+      infoJsonlPath: join(storageRoot, "logs", bundleHash, "T02.info.jsonl"),
+      cas,
+    };
+
+    let observedHead: string | null = null;
+    let observedHeadAtSecondYield: string | null = null;
+
+    const opts = makeOptions({
+      storageRoot,
+      awaitAfterEachYield: async () => {
+        const text = await readFile(join(bundleDir, "threads.json"), "utf8");
+        const parsed = JSON.parse(text) as Record<string, { head: string }>;
+        const head = parsed.T02?.head ?? null;
+        if (observedHead === null) {
+          observedHead = head;
+        } else if (observedHeadAtSecondYield === null) {
+          observedHeadAtSecondYield = head;
+        }
+      },
+    });
+
+    const result = await executeThread(
+      wf,
+      "demo",
+      { prompt: "p", steps: [] },
+      opts,
+      io,
+      noLogger(),
+    );
+    expect(result.returnCode).toBe(0);
+
+    expect(observedHead).not.toBeNull();
+    expect(observedHeadAtSecondYield).not.toBeNull();
+    expect(observedHead).not.toBe(observedHeadAtSecondYield);
+
+    const firstState = readCasNode(casDir, observedHead ?? "");
+    expect(firstState.type).toBe("state");
+    expect((firstState.payload as Record<string, unknown>).role).toBe("planner");
+    expect((firstState.payload as Record<string, unknown>).ancestors).toEqual([]);
+
+    const secondState = readCasNode(casDir, observedHeadAtSecondYield ?? "");
+    expect(secondState.type).toBe("state");
+    expect((secondState.payload as Record<string, unknown>).role).toBe("coder");
+    expect((secondState.payload as Record<string, unknown>).ancestors).toEqual([observedHead]);
+    expect((secondState.payload as Record<string, unknown>).start).toBe(
+      (firstState.payload as Record<string, unknown>).start,
+    );
+  });
+
+  test("on completion: removes threads.json entry, appends history with __end__ head", async () => {
+    const cas = createCasStore(casDir);
+
+    const wf: WorkflowFn = async function* (
+      _thread: ThreadContext,
+      runtime: WorkflowRuntime,
+    ): AsyncGenerator<RoleOutput, WorkflowCompletion> {
+      const h = await runtime.cas.put("only-step");
+      yield { role: "only", contentHash: h, meta: {}, refs: [h] };
+      return { returnCode: 0, summary: "completed" };
+    };
+
+    const io: ExecuteThreadIo = {
+      threadId: "T03",
+      hash: bundleHash,
+      infoJsonlPath: join(storageRoot, "logs", bundleHash, "T03.info.jsonl"),
+      cas,
+    };
+
+    const result = await executeThread(
+      wf,
+      "demo",
+      { prompt: "p", steps: [] },
+      makeOptions({ storageRoot }),
+      io,
+      noLogger(),
+    );
+
+    expect(result.returnCode).toBe(0);
+
+    const indexText = await readFile(join(bundleDir, "threads.json"), "utf8");
+    const indexParsed = JSON.parse(indexText) as Record<string, unknown>;
+    expect(indexParsed).toEqual({});
+
+    const historyPath = await firstHistoryFile(bundleDir);
+    const historyText = await readFile(historyPath, "utf8");
+    const lines = historyText.trim().split("\n");
+    expect(lines.length).toBe(1);
+    const entry = JSON.parse(lines[0] ?? "") as Record<string, unknown>;
+    expect(entry.threadId).toBe("T03");
+    expect(entry.head).toBe(result.rootHash);
+
+    const endNode = readCasNode(casDir, String(entry.head));
+    expect(endNode.type).toBe("state");
+    expect((endNode.payload as Record<string, unknown>).role).toBe("__end__");
+    expect((endNode.payload as Record<string, unknown>).meta).toEqual({
+      returnCode: 0,
+      summary: "completed",
+    });
+  });
+
+  test("does not write any .data.jsonl file under storageRoot", async () => {
+    const cas = createCasStore(casDir);
+
+    const wf: WorkflowFn = async function* (
+      _thread: ThreadContext,
+      runtime: WorkflowRuntime,
+    ): AsyncGenerator<RoleOutput, WorkflowCompletion> {
+      const h = await runtime.cas.put("step");
+      yield { role: "only", contentHash: h, meta: {}, refs: [h] };
+      return { returnCode: 0, summary: "done" };
+    };
+
+    const io: ExecuteThreadIo = {
+      threadId: "T04",
+      hash: bundleHash,
+      infoJsonlPath: join(storageRoot, "logs", bundleHash, "T04.info.jsonl"),
+      cas,
+    };
+
+    await executeThread(
+      wf,
+      "demo",
+      { prompt: "p", steps: [] },
+      makeOptions({ storageRoot }),
+      io,
+      noLogger(),
+    );
+
+    const fsp = await import("node:fs/promises");
+    const found: string[] = [];
+    async function walk(dir: string): Promise<void> {
+      let entries: { name: string; isDirectory: () => boolean; isFile: () => boolean }[];
+      try {
+        entries = await fsp.readdir(dir, { withFileTypes: true });
+      } catch {
+        return;
+      }
+      for (const ent of entries) {
+        const p = join(dir, ent.name);
+        if (ent.isDirectory()) {
+          await walk(p);
+        } else if (ent.isFile() && ent.name.endsWith(".data.jsonl")) {
+          found.push(p);
+        }
+      }
+    }
+    await walk(storageRoot);
+    expect(found).toEqual([]);
+  });
+});
+
+async function firstHistoryFile(bundleDir: string): Promise<string> {
+  const fsp = await import("node:fs/promises");
+  const dir = join(bundleDir, "history");
+  const entries = await fsp.readdir(dir);
+  const file = entries.find((n) => n.endsWith(".jsonl"));
+  if (file === undefined) {
+    throw new Error(`no history file under ${dir}`);
+  }
+  return join(dir, file);
+}

packages/workflow-execute/__tests__/extract-refs.test.ts

@@ -0,0 +1,59 @@
+import { afterEach, describe, expect, test } from "bun:test";
+import { mkdtemp, rm } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { createCasStore, putContentNodeWithRefs } from "@uncaged/workflow-cas";
+import * as z from "zod/v4";
+
+import { createExtract } from "../src/extract/extract-fn.js";
+
+function installPlainJsonExtractMock(meta: Record<string, unknown>): () => void {
+  const origFetch = globalThis.fetch;
+  const mockFetch = async (): Promise<Response> =>
+    new Response(
+      JSON.stringify({
+        choices: [{ message: { content: JSON.stringify(meta) } }],
+      }),
+      { status: 200, headers: { "Content-Type": "application/json" } },
+    );
+  globalThis.fetch = Object.assign(mockFetch, {
+    preconnect: origFetch.preconnect.bind(origFetch),
+  }) as typeof fetch;
+  return () => {
+    globalThis.fetch = origFetch;
+  };
+}
+
+describe("createExtract — ExtractResult shape", () => {
+  let restoreFetch: (() => void) | null = null;
+
+  afterEach(() => {
+    restoreFetch?.();
+    restoreFetch = null;
+  });
+
+  test("returns meta, contentPayload, and refs[]", async () => {
+    restoreFetch = installPlainJsonExtractMock({ confidence: 0.9 });
+
+    const dir = await mkdtemp(join(tmpdir(), "wf-extract-refs-"));
+    try {
+      const cas = createCasStore(join(dir, "cas"));
+      const extract = createExtract(
+        { baseUrl: "http://127.0.0.1:9", apiKey: "key", model: "m" },
+        { cas },
+      );
+
+      const schema = z.object({ confidence: z.number() });
+      const contentHash = await putContentNodeWithRefs(cas, "model says hello", []);
+
+      const out = await extract(schema, contentHash);
+
+      expect(out.meta).toEqual({ confidence: 0.9 });
+      expect(out.contentPayload).toBe("model says hello");
+      expect(Array.isArray(out.refs)).toBe(true);
+      expect(out.refs).toEqual([]);
+    } finally {
+      await rm(dir, { recursive: true, force: true });
+    }
+  });
+});

packages/workflow-execute/__tests__/gc-mark-sweep.test.ts

@@ -0,0 +1,111 @@
+import { afterEach, beforeEach, describe, expect, test } from "bun:test";
+import { mkdir, mkdtemp, rm, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import {
+  createCasStore,
+  putContentNodeWithRefs,
+  putStartNode,
+  putStateNode,
+} from "@uncaged/workflow-cas";
+import type { StateNodePayload } from "@uncaged/workflow-protocol";
+
+import { FORK_BRANCH_ROLE } from "../src/engine/fork-thread.js";
+import { garbageCollectCas } from "../src/engine/gc.js";
+import { getBundleDir, removeThreadEntry, upsertThreadEntry } from "../src/engine/threads-index.js";
+
+describe("garbageCollectCas (mark-and-sweep)", () => {
+  let storageRoot: string;
+  let casDir: string;
+
+  beforeEach(async () => {
+    storageRoot = await mkdtemp(join(tmpdir(), "uncaged-wf-gc-ms-"));
+    casDir = join(storageRoot, "cas");
+    await mkdir(casDir, { recursive: true });
+    await writeFile(
+      join(storageRoot, "workflow.yaml"),
+      "config:\n  maxDepth: 1\n  supervisorInterval: 0\n  providers: {}\n  models: {}\nworkflows: {}\n",
+      "utf8",
+    );
+  });
+
+  afterEach(async () => {
+    await rm(storageRoot, { recursive: true, force: true });
+  });
+
+  test("shared CAS prefix survives when one fork thread index entry is removed", async () => {
+    const bundleHash = "TESTGC0000001";
+    const bundleDir = getBundleDir(storageRoot, bundleHash);
+    await mkdir(bundleDir, { recursive: true });
+
+    const cas = createCasStore(casDir);
+    const promptHash = await cas.put("prompt");
+    const startHash = await putStartNode(
+      cas,
+      {
+        name: "demo",
+        hash: bundleHash,
+        depth: 0,
+      },
+      promptHash,
+    );
+
+    const c1 = await putContentNodeWithRefs(cas, "p1", []);
+    const h1 = await putStateNode(cas, {
+      role: "planner",
+      meta: {},
+      start: startHash,
+      content: c1,
+      ancestors: [],
+      compact: null,
+      timestamp: 1,
+    } satisfies StateNodePayload);
+
+    const c2 = await putContentNodeWithRefs(cas, "c1", []);
+    const h2 = await putStateNode(cas, {
+      role: "coder",
+      meta: {},
+      start: startHash,
+      content: c2,
+      ancestors: [h1],
+      compact: null,
+      timestamp: 2,
+    } satisfies StateNodePayload);
+
+    const ec = await putContentNodeWithRefs(cas, "", []);
+    const fm = await putStateNode(cas, {
+      role: FORK_BRANCH_ROLE,
+      meta: {},
+      start: startHash,
+      content: ec,
+      ancestors: [h1],
+      compact: null,
+      timestamp: 3,
+    } satisfies StateNodePayload);
+
+    await upsertThreadEntry(bundleDir, "THREAD_AAAAAAA", {
+      head: h2,
+      start: startHash,
+      updatedAt: 10,
+    });
+    await upsertThreadEntry(bundleDir, "THREAD_BBBBBBB", {
+      head: fm,
+      start: startHash,
+      updatedAt: 20,
+    });
+
+    await removeThreadEntry(bundleDir, "THREAD_AAAAAAA");
+
+    const gc = await garbageCollectCas(storageRoot);
+    expect(gc.ok).toBe(true);
+    if (!gc.ok) {
+      return;
+    }
+
+    expect(await cas.get(h2)).toBeNull();
+    expect(await cas.get(h1)).not.toBeNull();
+    expect(await cas.get(startHash)).not.toBeNull();
+    expect(await cas.get(promptHash)).not.toBeNull();
+    expect(await cas.get(fm)).not.toBeNull();
+  });
+});

packages/workflow-execute/__tests__/threads-index.test.ts

@@ -0,0 +1,91 @@
+import { afterEach, beforeEach, describe, expect, test } from "bun:test";
+import { mkdtemp, readdir, readFile, rm } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+
+import {
+  appendThreadHistoryEntry,
+  removeThreadEntry,
+  upsertThreadEntry,
+} from "../src/engine/threads-index.js";
+
+describe("threads-index", () => {
+  let bundleDir: string;
+
+  beforeEach(async () => {
+    bundleDir = await mkdtemp(join(tmpdir(), "uncaged-wf-threads-"));
+  });
+
+  afterEach(async () => {
+    await rm(bundleDir, { recursive: true, force: true });
+  });
+
+  test("upsertThreadEntry creates threads.json and persists entries", async () => {
+    await upsertThreadEntry(bundleDir, "T1", { head: "H1", start: "S1", updatedAt: 100 });
+    const text = await readFile(join(bundleDir, "threads.json"), "utf8");
+    const parsed = JSON.parse(text) as Record<string, unknown>;
+    expect(parsed).toEqual({
+      T1: { head: "H1", start: "S1", updatedAt: 100 },
+    });
+  });
+
+  test("upsertThreadEntry overwrites the head while preserving siblings", async () => {
+    await upsertThreadEntry(bundleDir, "T1", { head: "H1", start: "S1", updatedAt: 100 });
+    await upsertThreadEntry(bundleDir, "T2", { head: "H2", start: "S2", updatedAt: 200 });
+    await upsertThreadEntry(bundleDir, "T1", { head: "H1B", start: "S1", updatedAt: 300 });
+    const text = await readFile(join(bundleDir, "threads.json"), "utf8");
+    const parsed = JSON.parse(text) as Record<string, unknown>;
+    expect(parsed).toEqual({
+      T1: { head: "H1B", start: "S1", updatedAt: 300 },
+      T2: { head: "H2", start: "S2", updatedAt: 200 },
+    });
+  });
+
+  test("removeThreadEntry deletes the entry but keeps the file", async () => {
+    await upsertThreadEntry(bundleDir, "T1", { head: "H1", start: "S1", updatedAt: 100 });
+    await upsertThreadEntry(bundleDir, "T2", { head: "H2", start: "S2", updatedAt: 200 });
+    await removeThreadEntry(bundleDir, "T1");
+    const text = await readFile(join(bundleDir, "threads.json"), "utf8");
+    const parsed = JSON.parse(text) as Record<string, unknown>;
+    expect(parsed).toEqual({
+      T2: { head: "H2", start: "S2", updatedAt: 200 },
+    });
+  });
+
+  test("removeThreadEntry on a missing thread is a no-op", async () => {
+    await removeThreadEntry(bundleDir, "MISSING");
+    const dirEntries = await readdir(bundleDir);
+    expect(dirEntries.includes("threads.json")).toBe(false);
+  });
+
+  test("appendThreadHistoryEntry writes one JSONL line per call into a date-keyed file", async () => {
+    const ts = Date.UTC(2026, 4, 9, 12, 0, 0);
+    await appendThreadHistoryEntry(bundleDir, {
+      threadId: "T1",
+      head: "H1",
+      start: "S1",
+      completedAt: ts,
+    });
+    await appendThreadHistoryEntry(bundleDir, {
+      threadId: "T2",
+      head: "H2",
+      start: "S2",
+      completedAt: ts,
+    });
+    const text = await readFile(join(bundleDir, "history", "2026-05-09.jsonl"), "utf8");
+    const lines = text.trim().split("\n");
+    expect(lines.length).toBe(2);
+    expect(JSON.parse(lines[0] ?? "{}")).toEqual({
+      threadId: "T1",
+      head: "H1",
+      start: "S1",
+      completedAt: ts,
+    });
+    expect(JSON.parse(lines[1] ?? "{}")).toEqual({
+      threadId: "T2",
+      head: "H2",
+      start: "S2",
+      completedAt: ts,
+    });
+  });
+});

packages/workflow-execute/pnpm-lock.yaml

@@ -0,0 +1,51 @@
+lockfileVersion: '9.0'
+
+settings:
+  autoInstallPeers: true
+  excludeLinksFromLockfile: false
+
+importers:
+
+  .:
+    dependencies:
+      '@uncaged/workflow-cas':
+        specifier: workspace:*
+        version: link:../workflow-cas
+      '@uncaged/workflow-protocol':
+        specifier: workspace:*
+        version: link:../workflow-protocol
+      '@uncaged/workflow-reactor':
+        specifier: workspace:*
+        version: link:../workflow-reactor
+      '@uncaged/workflow-register':
+        specifier: workspace:*
+        version: link:../workflow-register
+      '@uncaged/workflow-runtime':
+        specifier: workspace:*
+        version: link:../workflow-runtime
+      '@uncaged/workflow-util':
+        specifier: workspace:*
+        version: link:../workflow-util
+      yaml:
+        specifier: ^2.7.1
+        version: 2.8.4
+    devDependencies:
+      zod:
+        specifier: ^4.0.0
+        version: 4.4.3
+
+packages:
+
+  yaml@2.8.4:
+    resolution: {integrity: sha512-ml/JPOj9fOQK8RNnWojA67GbZ0ApXAUlN2UQclwv2eVgTgn7O9gg9o7paZWKMp4g0H3nTLtS9LVzhkpOFIKzog==}
+    engines: {node: '>= 14.6'}
+    hasBin: true
+
+  zod@4.4.3:
+    resolution: {integrity: sha512-ytENFjIJFl2UwYglde2jchW2Hwm4GJFLDiSXWdTrJQBIN9Fcyp7n4DhxJEiWNAJMV1/BqWfW/kkg71UDcHJyTQ==}
+
+snapshots:
+
+  yaml@2.8.4: {}
+
+  zod@4.4.3: {}

packages/workflow-execute/src/cas-reactor.ts

@@ -0,0 +1,79 @@
+import type { CasStore } from "@uncaged/workflow-cas";
+import type { ThreadReactorFn } from "@uncaged/workflow-reactor";
+import { createLlmFn, createThreadReactor } from "@uncaged/workflow-reactor";
+import type { LlmProvider } from "@uncaged/workflow-runtime";
+
+import { extractFunctionToolFromZodSchema } from "./extract/index.js";
+
+export type CasReactorThread = {
+  cas: CasStore;
+};
+
+const CAS_GET_TOOL_DEFINITION = {
+  type: "function" as const,
+  function: {
+    name: "cas_get",
+    description:
+      "Read a Merkle DAG node from content-addressed storage by its hash. Returns YAML-formatted node with type, payload, and refs or children fields (content nodes use refs).",
+    parameters: {
+      type: "object",
+      properties: {
+        hash: { type: "string", description: "The CAS hash to retrieve" },
+      },
+      required: ["hash"],
+    },
+  },
+};
+
+function isRecord(value: unknown): value is Record<string, unknown> {
+  return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+
+export type CasReactorOpts = {
+  maxRounds: number;
+  systemPromptForStructuredTool: (structuredToolName: string) => string;
+};
+
+export function createCasReactor(
+  provider: LlmProvider,
+  cas: CasStore,
+  opts: CasReactorOpts,
+): ThreadReactorFn<CasReactorThread> {
+  return createThreadReactor<CasReactorThread>({
+    llm: createLlmFn(provider),
+    maxRounds: opts.maxRounds,
+    staticTools: [CAS_GET_TOOL_DEFINITION],
+    structuredToolFromSchema: (schema) => {
+      const t = extractFunctionToolFromZodSchema(schema);
+      return {
+        name: t.name,
+        tool: {
+          type: "function" as const,
+          function: {
+            name: t.name,
+            description: t.description,
+            parameters: t.parameters,
+          },
+        },
+      };
+    },
+    systemPromptForStructuredTool: opts.systemPromptForStructuredTool,
+    toolHandler: async (call, _thread) => {
+      if (call.function.name !== "cas_get") {
+        return `Unknown tool: ${call.function.name}`;
+      }
+      let hash: string;
+      try {
+        const ta = JSON.parse(call.function.arguments) as unknown;
+        if (!isRecord(ta) || typeof ta.hash !== "string") {
+          return 'cas_get requires {"hash": "<cas-hash>"}.';
+        }
+        hash = ta.hash;
+      } catch {
+        return "cas_get arguments were not valid JSON.";
+      }
+      const blob = await cas.get(hash);
+      return blob === null ? "null" : blob;
+    },
+  });
+}

packages/workflow-execute/src/engine/engine.ts

@@ -1,5 +1,18 @@
-import { appendFile, mkdir } from "node:fs/promises";
+import { mkdir } from "node:fs/promises";
 import { dirname } from "node:path";
+import {
+  type CasStore,
+  getContentMerklePayload,
+  putContentNodeWithRefs,
+  putStartNode,
+  putStateNode,
+} from "@uncaged/workflow-cas";
+import type { StateNode } from "@uncaged/workflow-protocol";
+import {
+  readWorkflowRegistry,
+  resolveModel,
+  type WorkflowConfig,
+} from "@uncaged/workflow-register";
 import type {
   LlmProvider,
   RoleOutput,
@@ -9,20 +22,30 @@ import type {
   WorkflowResult,
   WorkflowRuntime,
 } from "@uncaged/workflow-runtime";
-import { START } from "@uncaged/workflow-runtime";
-import {
-  type CasStore,
-  getContentMerklePayload,
-  putStepMerkleNode,
-  putThreadMerkleNode,
-} from "@uncaged/workflow-cas";
-import { resolveModel } from "@uncaged/workflow-register";
-import { createExtract } from "../extract/index.js";
-import { readWorkflowRegistry, type WorkflowConfig } from "@uncaged/workflow-register";
-import { err, type LogFn, normalizeRefsField, ok, type Result } from "@uncaged/workflow-util";
+import { END, START } from "@uncaged/workflow-runtime";
+import { err, type LogFn, ok, type Result } from "@uncaged/workflow-util";
 
+import { createExtract } from "../extract/index.js";
+import { createSummarizer, type SummarizeFn } from "./summarizer.js";
 import { runSupervisor } from "./supervisor.js";
-import type { ExecuteThreadIo, ExecuteThreadOptions } from "./types.js";
+import {
+  appendThreadHistoryEntry,
+  getBundleDir,
+  removeThreadEntry,
+  upsertThreadEntry,
+} from "./threads-index.js";
+import type { ChainState, ExecuteThreadIo, ExecuteThreadOptions } from "./types.js";
+import { EMPTY_CHAIN_STATE } from "./types.js";
+
+/** Cap for {@link StateNode}.payload.ancestors: 1 parent + 10 skip-list. */
+const ANCESTORS_CAP = 11;
+
+function computeAncestors(chain: ChainState): string[] {
+  if (chain.parentStateHash === null) {
+    return [];
+  }
+  return [chain.parentStateHash, ...chain.parentAncestors].slice(0, ANCESTORS_CAP);
+}
 
 async function resolveEngineRegistryRuntime(
   storageRoot: string,
@@ -31,6 +54,7 @@ async function resolveEngineRegistryRuntime(
   Result<
     {
       extract: ReturnType<typeof createExtract>;
+      summarize: SummarizeFn;
       workflowConfig: WorkflowConfig;
     },
     string
@@ -54,54 +78,115 @@ async function resolveEngineRegistryRuntime(
     apiKey: ex.apiKey,
     model: ex.model,
   };
-  return ok({ extract: createExtract(llmProvider, { cas }), workflowConfig: cfg });
+  return ok({
+    extract: createExtract(llmProvider, { cas }),
+    summarize: createSummarizer(llmProvider, cas),
+    workflowConfig: cfg,
+  });
 }
 
-async function appendDataLine(path: string, record: unknown): Promise<void> {
-  const line = `${JSON.stringify(record)}\n`;
-  await appendFile(path, line, "utf8");
-}
-
-async function finalizeThreadResult(params: {
+async function appendStateForStep(params: {
   cas: CasStore;
-  workflowName: string;
+  startHash: string;
+  chain: ChainState;
+  role: string;
+  contentHash: string;
+  meta: Record<string, unknown>;
+  refs: readonly string[];
+  timestamp: number;
+}): Promise<{ stateHash: string; chain: ChainState }> {
+  const text = await getContentMerklePayload(params.cas, params.contentHash);
+  if (text === null) {
+    throw new Error(
+      `role step ${params.role}: CAS blob missing for contentHash ${params.contentHash}`,
+    );
+  }
+  const artifactRefs = params.refs.filter((r) => r !== params.contentHash);
+  const contentHash = await putContentNodeWithRefs(params.cas, text, artifactRefs);
+  const ancestors = computeAncestors(params.chain);
+  const payload: StateNode["payload"] = {
+    role: params.role,
+    meta: params.meta,
+    start: params.startHash,
+    content: contentHash,
+    ancestors,
+    compact: null,
+    timestamp: params.timestamp,
+  };
+  const stateHash = await putStateNode(params.cas, payload);
+  return {
+    stateHash,
+    chain: { parentStateHash: stateHash, parentAncestors: ancestors },
+  };
+}
+
+async function appendEndState(params: {
+  cas: CasStore;
+  startHash: string;
+  chain: ChainState;
+  completion: WorkflowCompletion;
+  timestamp: number;
+}): Promise<string> {
+  const contentHash = await putContentNodeWithRefs(params.cas, params.completion.summary, []);
+  const ancestors = computeAncestors(params.chain);
+  const payload: StateNode["payload"] = {
+    role: END,
+    meta: { returnCode: params.completion.returnCode, summary: params.completion.summary },
+    start: params.startHash,
+    content: contentHash,
+    ancestors,
+    compact: null,
+    timestamp: params.timestamp,
+  };
+  return putStateNode(params.cas, payload);
+}
+
+async function finalizeThread(params: {
+  cas: CasStore;
+  bundleDir: string;
   threadId: string;
-  stepMerkleHashes: readonly string[];
+  startHash: string;
+  chain: ChainState;
   completion: WorkflowCompletion;
 }): Promise<WorkflowResult> {
-  const rootHash = await putThreadMerkleNode(
-    params.cas,
-    {
-      workflow: params.workflowName,
-      threadId: params.threadId,
-      result: {
-        returnCode: params.completion.returnCode,
-        summary: params.completion.summary,
-      },
-    },
-    params.stepMerkleHashes,
-  );
+  const ts = Date.now();
+  const endHash = await appendEndState({
+    cas: params.cas,
+    startHash: params.startHash,
+    chain: params.chain,
+    completion: params.completion,
+    timestamp: ts,
+  });
+  await removeThreadEntry(params.bundleDir, params.threadId);
+  await appendThreadHistoryEntry(params.bundleDir, {
+    threadId: params.threadId,
+    head: endHash,
+    start: params.startHash,
+    completedAt: ts,
+  });
   return {
     returnCode: params.completion.returnCode,
     summary: params.completion.summary,
-    rootHash,
+    rootHash: endHash,
   };
 }
 
 async function finalizeAbortedThread(params: {
   cas: CasStore;
-  workflowName: string;
+  bundleDir: string;
   threadId: string;
-  stepMerkleHashes: string[];
+  startHash: string;
+  chain: ChainState;
   logger: LogFn;
   abortLogTag: string;
 }): Promise<WorkflowResult> {
   params.logger(params.abortLogTag, `thread ${params.threadId} aborted`);
-  return finalizeThreadResult({
+  return finalizeThread({
     cas: params.cas,
-    workflowName: params.workflowName,
+    bundleDir: params.bundleDir,
     threadId: params.threadId,
-    stepMerkleHashes: params.stepMerkleHashes,
+    startHash: params.startHash,
+    chain: params.chain,
     completion: { returnCode: 130, summary: "thread aborted" },
   });
 }
@@ -114,8 +199,9 @@ async function maybeSupervisorHaltsThread(params: {
   logger: LogFn;
   threadId: string;
   cas: CasStore;
-  workflowName: string;
-  stepMerkleHashes: string[];
+  bundleDir: string;
+  startHash: string;
+  chain: ChainState;
 }): Promise<WorkflowResult | null> {
   const interval = params.workflowConfig.supervisorInterval;
   if (interval <= 0 || params.written % interval !== 0) {
@@ -131,115 +217,121 @@ async function maybeSupervisorHaltsThread(params: {
     params.logger("K6PW9NYT", `supervisor skipped: ${sup.error}`);
     return null;
   }
-  if (sup.value !== "stop") {
+  if (sup.value !== "kill") {
     return null;
   }
-  params.logger("M4QX8VHN", `thread ${params.threadId} stopped by supervisor`);
-  return finalizeThreadResult({
+  params.logger("M4QX8VHN", `thread ${params.threadId} killed by supervisor`);
+  return finalizeThread({
     cas: params.cas,
-    workflowName: params.workflowName,
+    bundleDir: params.bundleDir,
     threadId: params.threadId,
-    stepMerkleHashes: params.stepMerkleHashes,
-    completion: { returnCode: 0, summary: "completed: supervisor stopped thread" },
+    startHash: params.startHash,
+    chain: params.chain,
+    completion: { returnCode: 1, summary: "killed: supervisor detected pathological behavior" },
+  });
+}
+
+async function publishHead(params: {
+  bundleDir: string;
+  threadId: string;
+  startHash: string;
+  headHash: string;
+}): Promise<void> {
+  await upsertThreadEntry(params.bundleDir, params.threadId, {
+    head: params.headHash,
+    start: params.startHash,
+    updatedAt: Date.now(),
   });
 }
 
 async function driveWorkflowGenerator(params: {
   fn: WorkflowFn;
-  workflowName: string;
   workflowConfig: WorkflowConfig;
   thread: ThreadContext;
   runtime: WorkflowRuntime;
   executeOptions: ExecuteThreadOptions;
-  dataJsonlPath: string;
   threadId: string;
   logger: LogFn;
   cas: CasStore;
-  stepMerkleHashes: string[];
+  bundleDir: string;
+  startHash: string;
+  chain: ChainState;
+  summarize: SummarizeFn;
 }): Promise<WorkflowResult> {
   const {
     fn,
-    workflowName,
     workflowConfig,
     thread,
     runtime,
     executeOptions,
-    dataJsonlPath,
     threadId,
     logger,
     cas,
-    stepMerkleHashes,
+    bundleDir,
+    startHash,
+    summarize,
   } = params;
+  let chain: ChainState = params.chain;
   const gen = fn(thread, runtime);
   let written = 0;
   const recentSupervisorSteps: { role: string; summary: string }[] = thread.steps.map((s) => ({
     role: s.role,
     summary: JSON.stringify(s.meta),
   }));
+  const summarizerSteps: { role: string; contentHash: string }[] = thread.steps.map((s) => ({
+    role: s.role,
+    contentHash: s.contentHash,
+  }));
 
   while (true) {
     if (executeOptions.signal.aborted) {
       return await finalizeAbortedThread({
         cas,
-        workflowName,
+        bundleDir,
         threadId,
-        stepMerkleHashes,
+        startHash,
+        chain,
         logger,
         abortLogTag: "V8JX4NP2",
       });
     }
 
-    if (written >= executeOptions.maxRounds) {
-      logger("R3CW7YBQ", `thread ${threadId} stopped at maxRounds=${executeOptions.maxRounds}`);
-      return await finalizeThreadResult({
-        cas,
-        workflowName,
-        threadId,
-        stepMerkleHashes,
-        completion: {
-          returnCode: 0,
-          summary: `completed: reached maxRounds (${executeOptions.maxRounds})`,
-        },
-      });
-    }
-
     const iterResult = await gen.next();
 
     if (iterResult.done) {
       logger("F3HN8QKP", `thread ${threadId} generator finished`);
-      const completion = iterResult.value;
-      return await finalizeThreadResult({
+      const rawCompletion = iterResult.value;
+      const llmSummary = await summarize({
+        prompt: thread.start.content,
+        recentSteps: summarizerSteps,
+        fallback: rawCompletion.summary,
+        logger,
+      });
+      return await finalizeThread({
         cas,
-        workflowName,
+        bundleDir,
         threadId,
-        stepMerkleHashes,
-        completion,
+        startHash,
+        chain,
+        completion: { ...rawCompletion, summary: llmSummary },
       });
     }
 
     written++;
     const step = iterResult.value;
-    const resolved = await getContentMerklePayload(cas, step.contentHash);
-    if (resolved === null) {
-      throw new Error(
-        `role step ${step.role}: CAS blob missing for contentHash ${step.contentHash}`,
-      );
-    }
     const ts = Date.now();
-    await appendDataLine(dataJsonlPath, {
+    const written_ = await appendStateForStep({
+      cas,
+      startHash,
+      chain,
       role: step.role,
       contentHash: step.contentHash,
       meta: step.meta,
-      refs: normalizeRefsField(step.refs),
+      refs: step.refs,
       timestamp: ts,
     });
-
-    const stepNodeHash = await putStepMerkleNode(
-      cas,
-      { role: step.role, meta: step.meta },
-      step.contentHash,
-    );
-    stepMerkleHashes.push(stepNodeHash);
+    chain = written_.chain;
+    await publishHead({ bundleDir, threadId, startHash, headHash: written_.stateHash });
 
     logger("N7BW4YHQ", `thread ${threadId} wrote role ${step.role}`);
 
@@ -247,6 +339,7 @@ async function driveWorkflowGenerator(params: {
       role: step.role,
       summary: JSON.stringify(step.meta),
     });
+    summarizerSteps.push({ role: step.role, contentHash: step.contentHash });
 
     await Promise.race([
       executeOptions.awaitAfterEachYield(),
@@ -262,9 +355,10 @@ async function driveWorkflowGenerator(params: {
     if (executeOptions.signal.aborted) {
       return await finalizeAbortedThread({
         cas,
-        workflowName,
+        bundleDir,
         threadId,
-        stepMerkleHashes,
+        startHash,
+        chain,
         logger,
         abortLogTag: "V8JX4NP4",
       });
@@ -278,8 +372,9 @@ async function driveWorkflowGenerator(params: {
       logger,
       threadId,
       cas,
-      workflowName,
-      stepMerkleHashes,
+      bundleDir,
+      startHash,
+      chain,
     });
     if (supervised !== null) {
       return supervised;
@@ -288,8 +383,16 @@ async function driveWorkflowGenerator(params: {
 }
 
 /**
- * Execute a workflow thread: drive the bundle's AsyncGenerator, RFC-001 `.data.jsonl` records,
- * debug lines via `logger` to `.info.jsonl`.
+ * Execute a workflow thread by driving the bundle's `AsyncGenerator`.
+ *
+ * Persistence layout (RFC v3 — CAS-based thread storage):
+ * - Thread chain is written as immutable CAS blobs: a single {@link StartNode}
+ *   plus one {@link StateNode} per role step (including a final `__end__`
+ *   state on completion / abort).
+ * - The active thread head is published in `<bundleDir>/threads.json`; on
+ *   completion it is removed and a record is appended to
+ *   `<bundleDir>/history/{YYYY-MM-DD}.jsonl`.
+ * - Debug logging continues to flow through `logger` to `.info.jsonl`.
  */
 export async function executeThread(
   fn: WorkflowFn,
@@ -299,77 +402,82 @@ export async function executeThread(
   io: ExecuteThreadIo,
   logger: LogFn,
 ): Promise<WorkflowResult> {
-  await mkdir(dirname(io.dataJsonlPath), { recursive: true });
   await mkdir(dirname(io.infoJsonlPath), { recursive: true });
 
   const prefilled = options.prefilledDiskSteps;
+  const fork = options.forkContinuation;
+
+  if (fork !== null && prefilled !== null) {
+    throw new Error("forkContinuation and prefilledDiskSteps cannot both be set");
+  }
+
   if (prefilled !== null && prefilled.length !== input.steps.length) {
     throw new Error(
       `prefilledDiskSteps length (${prefilled.length}) must match input.steps length (${input.steps.length})`,
     );
   }
 
-  const nowMs = Date.now();
-  const startRecord: Record<string, unknown> = {
-    name: workflowName,
-    hash: io.hash,
-    threadId: io.threadId,
-    parameters: {
-      prompt: input.prompt,
-      options: {
-        maxRounds: options.maxRounds,
-        depth: options.depth,
-      },
-    },
-    timestamp: nowMs,
-  };
-  if (options.forkSourceThreadId !== null) {
-    startRecord.forkFrom = { threadId: options.forkSourceThreadId };
+  const replayTs = options.replayTimestamps;
+  if (replayTs !== null && replayTs.length !== input.steps.length) {
+    throw new Error(
+      `replayTimestamps length (${replayTs.length}) must match input.steps length (${input.steps.length})`,
+    );
   }
 
-  await appendDataLine(io.dataJsonlPath, startRecord);
+  const bundleDir = getBundleDir(options.storageRoot, io.hash);
 
-  logger("T9HQ2KHM", `thread ${io.threadId} started for workflow ${workflowName}`);
+  let startHash: string;
 
-  const stepMerkleHashes: string[] = [];
+  if (fork !== null) {
+    startHash = fork.startHash;
+    logger("T9HQ2KHM", `thread ${io.threadId} continued fork for workflow ${workflowName}`);
+  } else {
+    const promptHash = await io.cas.put(input.prompt);
+    startHash = await putStartNode(
+      io.cas,
+      {
+        name: workflowName,
+        hash: io.hash,
+        depth: options.depth,
+      },
+      promptHash,
+    );
+
+    await publishHead({
+      bundleDir,
+      threadId: io.threadId,
+      startHash,
+      headHash: startHash,
+    });
+
+    logger("T9HQ2KHM", `thread ${io.threadId} started for workflow ${workflowName}`);
+  }
+
+  let chain: ChainState = fork !== null ? fork.initialChain : EMPTY_CHAIN_STATE;
 
   if (prefilled !== null) {
     for (const row of prefilled) {
-      const prefilledPayload = await getContentMerklePayload(io.cas, row.contentHash);
-      if (prefilledPayload === null) {
-        throw new Error(
-          `prefilled step ${row.role}: CAS blob missing for contentHash ${row.contentHash}`,
-        );
-      }
-      await appendDataLine(io.dataJsonlPath, {
+      const written = await appendStateForStep({
+        cas: io.cas,
+        startHash,
+        chain,
         role: row.role,
         contentHash: row.contentHash,
         meta: row.meta,
-        refs: normalizeRefsField(row.refs),
+        refs: row.refs,
         timestamp: row.timestamp,
       });
-      const stepNodeHash = await putStepMerkleNode(
-        io.cas,
-        { role: row.role, meta: row.meta },
-        row.contentHash,
-      );
-      stepMerkleHashes.push(stepNodeHash);
+      chain = written.chain;
+      await publishHead({
+        bundleDir,
+        threadId: io.threadId,
+        startHash,
+        headHash: written.stateHash,
+      });
     }
   }
 
-  if (options.maxRounds <= 0) {
-    logger("R3CW7YBQ", `thread ${io.threadId} stopped at maxRounds=${options.maxRounds}`);
-    return await finalizeThreadResult({
-      cas: io.cas,
-      workflowName,
-      threadId: io.threadId,
-      stepMerkleHashes,
-      completion: {
-        returnCode: 0,
-        summary: `completed: reached maxRounds (${options.maxRounds})`,
-      },
-    });
-  }
+  const nowMs = Date.now();
 
   const registryRuntime = await resolveEngineRegistryRuntime(options.storageRoot, io.cas);
   if (!registryRuntime.ok) {
@@ -382,7 +490,7 @@ export async function executeThread(
     start: {
       role: START,
       content: input.prompt,
-      meta: { maxRounds: options.maxRounds },
+      meta: {},
       timestamp: nowMs,
     },
     steps: input.steps.map((out, i) => ({
@@ -390,7 +498,7 @@ export async function executeThread(
       contentHash: out.contentHash,
       meta: out.meta,
       refs: out.refs,
-      timestamp: prefilled?.[i]?.timestamp ?? nowMs + i,
+      timestamp: replayTs?.[i] ?? prefilled?.[i]?.timestamp ?? nowMs + i,
     })),
   };
 
@@ -401,15 +509,16 @@ export async function executeThread(
 
   return await driveWorkflowGenerator({
     fn,
-    workflowName,
     workflowConfig: registryRuntime.value.workflowConfig,
     thread,
     runtime,
     executeOptions: options,
-    dataJsonlPath: io.dataJsonlPath,
     threadId: io.threadId,
     logger,
     cas: io.cas,
-    stepMerkleHashes,
+    bundleDir,
+    startHash,
+    chain,
+    summarize: registryRuntime.value.summarize,
   });
 }

packages/workflow-execute/src/engine/fork-thread.ts

@@ -1,9 +1,29 @@
-import type { WorkflowCompletion } from "@uncaged/workflow-runtime";
-import { err, normalizeRefsField, ok, type Result } from "@uncaged/workflow-util";
+import type { CasStore } from "@uncaged/workflow-cas";
+import { parseCasThreadNode, putContentNodeWithRefs, putStateNode } from "@uncaged/workflow-cas";
+import type { StateNodePayload } from "@uncaged/workflow-protocol";
+import type { RoleOutput, WorkflowCompletion } from "@uncaged/workflow-runtime";
+import { END } from "@uncaged/workflow-runtime";
+import { err, ok, type Result } from "@uncaged/workflow-util";
+import { parse as parseYaml } from "yaml";
 
-import type { ForkHistoricalStep, ForkPlan, ParsedThreadStartRecord } from "./types.js";
+import { upsertThreadEntry } from "./threads-index.js";
+import type { CasForkPlan, ChainState, ForkContinuationOptions } from "./types.js";
+import { EMPTY_CHAIN_STATE } from "./types.js";
 
-/** Recognizes a persisted workflow completion line (no `role`; has numeric `returnCode` and string `summary`). Omits `rootHash` when absent. */
+/** Internal branch marker; skipped when presenting fork selection / replay slices. */
+export const FORK_BRANCH_ROLE = "__fork__";
+
+/** Cap for {@link StateNodePayload}.ancestors: 1 parent + 10 skip-list. */
+const ANCESTORS_CAP = 11;
+
+function computeAncestors(chain: ChainState): string[] {
+  if (chain.parentStateHash === null) {
+    return [];
+  }
+  return [chain.parentStateHash, ...chain.parentAncestors].slice(0, ANCESTORS_CAP);
+}
+
+/** Recognizes a persisted workflow completion line (no `role`; has numeric `returnCode` and string `summary`). */
 export function tryParseWorkflowResultRecord(
   obj: Record<string, unknown>,
 ): WorkflowCompletion | null {
@@ -18,227 +38,285 @@ export function tryParseWorkflowResultRecord(
   return { returnCode, summary };
 }
 
-export function tryParseRoleStepRecord(obj: Record<string, unknown>): ForkHistoricalStep | null {
-  const role = obj.role;
-  const contentHash = obj.contentHash;
-  const meta = obj.meta;
-  const timestamp = obj.timestamp;
-  if (typeof role !== "string") {
-    return null;
-  }
-  if (typeof contentHash !== "string") {
-    return null;
-  }
-  if (meta === null || typeof meta !== "object") {
-    return null;
-  }
-  if (typeof timestamp !== "number") {
-    return null;
-  }
-  return {
-    role,
-    contentHash,
-    meta: meta as Record<string, unknown>,
-    refs: normalizeRefsField(obj.refs),
-    timestamp,
-  };
-}
-
-function parseRoleLine(
-  obj: Record<string, unknown>,
-  lineIndex: number,
-): Result<ForkHistoricalStep, string> {
-  const parsed = tryParseRoleStepRecord(obj);
-  if (parsed === null) {
-    return err(`invalid role record at line ${lineIndex}`);
-  }
-  return ok(parsed);
-}
-
-function parseStartRecordLine(firstLine: string): Result<ParsedThreadStartRecord, string> {
-  let startParsed: unknown;
-  try {
-    startParsed = JSON.parse(firstLine) as unknown;
-  } catch {
-    return err("invalid JSON on line 1 (start record)");
-  }
-  if (startParsed === null || typeof startParsed !== "object") {
-    return err("invalid start record shape");
-  }
-  const startRec = startParsed as Record<string, unknown>;
-  const name = startRec.name;
-  const hash = startRec.hash;
-  const threadId = startRec.threadId;
-  const parameters = startRec.parameters;
-  if (typeof name !== "string" || typeof hash !== "string" || typeof threadId !== "string") {
-    return err("start record missing name, hash, or threadId");
-  }
-  if (parameters === null || typeof parameters !== "object") {
-    return err("start record missing parameters");
-  }
-  const paramsRec = parameters as Record<string, unknown>;
-  const prompt = paramsRec.prompt;
-  const options = paramsRec.options;
-  if (typeof prompt !== "string") {
-    return err("start record missing parameters.prompt");
-  }
-  if (options === null || typeof options !== "object") {
-    return err("start record missing parameters.options");
-  }
-  const optRec = options as Record<string, unknown>;
-  const maxRounds = optRec.maxRounds;
-  if (typeof maxRounds !== "number") {
-    return err("start record missing parameters.options.maxRounds");
-  }
-
-  const depthRaw = optRec.depth;
-  const depth =
-    typeof depthRaw === "number" && Number.isFinite(depthRaw) ? Math.trunc(depthRaw) : 0;
-
-  return ok({
-    workflowName: name,
-    hash,
-    threadId,
-    prompt,
-    maxRounds,
-    depth,
-  });
-}
-
-function parseFollowingRoleLines(lines: string[]): Result<ForkHistoricalStep[], string> {
-  const roleSteps: ForkHistoricalStep[] = [];
-  for (let i = 1; i < lines.length; i++) {
-    const line = lines[i];
-    if (line === undefined) {
+/** Walk {@link StateNode} hashes from head toward the first step (newest → oldest). */
+export async function walkStateFramesNewestFirst(
+  cas: CasStore,
+  headHash: string,
+): Promise<Array<{ hash: string; payload: StateNodePayload }>> {
+  const frames: Array<{ hash: string; payload: StateNodePayload }> = [];
+  let cur = headHash;
+  while (true) {
+    const yamlText = await cas.get(cur);
+    if (yamlText === null) {
       break;
     }
-    let rec: unknown;
-    try {
-      rec = JSON.parse(line) as unknown;
-    } catch {
-      return err(`invalid JSON at line ${i + 1}`);
-    }
-    if (rec === null || typeof rec !== "object") {
-      return err(`invalid record at line ${i + 1}`);
-    }
-    const recObj = rec as Record<string, unknown>;
-    const wf = tryParseWorkflowResultRecord(recObj);
-    if (wf !== null) {
-      if (i !== lines.length - 1) {
-        return err("WorkflowResult record must be the final line in `.data.jsonl`");
-      }
+    const parsed = parseCasThreadNode(yamlText);
+    if (parsed === null || parsed.kind !== "state") {
       break;
     }
-    const parsed = parseRoleLine(recObj, i + 1);
-    if (!parsed.ok) {
-      return parsed;
+    frames.push({ hash: cur, payload: parsed.node.payload });
+    const ancestors = parsed.node.payload.ancestors;
+    if (ancestors.length === 0) {
+      break;
     }
-    roleSteps.push(parsed.value);
+    const parent = ancestors[0];
+    if (parent === undefined || parent === "") {
+      break;
+    }
+    cur = parent;
   }
-  return ok(roleSteps);
+  return frames;
 }
 
-/**
- * Parse RFC-001 `.data.jsonl`: line 1 start record, line 2+ role outputs.
- */
-export function parseThreadDataJsonl(text: string): Result<
-  {
-    start: ParsedThreadStartRecord;
-    roleSteps: ForkHistoricalStep[];
-  },
-  string
-> {
-  const lines = text
-    .split("\n")
-    .map((l) => l.trim())
-    .filter((l) => l !== "");
-  if (lines.length === 0) {
-    return err("thread data is empty");
-  }
-
-  const firstLine = lines[0];
-  if (firstLine === undefined) {
-    return err("thread data is empty");
-  }
-
-  const start = parseStartRecordLine(firstLine);
-  if (!start.ok) {
-    return start;
-  }
-
-  const roleSteps = parseFollowingRoleLines(lines);
-  if (!roleSteps.ok) {
-    return roleSteps;
-  }
-
-  return ok({
-    start: start.value,
-    roleSteps: roleSteps.value,
-  });
-}
-
-function orderedUniqueRoles(roleSteps: ForkHistoricalStep[]): string[] {
+function orderedUniqueRoles(roles: string[]): string[] {
   const seen = new Set<string>();
   const out: string[] = [];
-  for (const s of roleSteps) {
-    if (!seen.has(s.role)) {
-      seen.add(s.role);
-      out.push(s.role);
+  for (const r of roles) {
+    if (!seen.has(r)) {
+      seen.add(r);
+      out.push(r);
     }
   }
   return out;
 }
 
-/**
- * Select historical steps for a fork:
- * - `fromRole === null`: drop the last step (retry the last role).
- * - `fromRole !== null`: keep steps through the first occurrence of that role (inclusive).
- */
-export function selectForkHistoricalSteps(
-  roleSteps: ForkHistoricalStep[],
+async function readPromptText(cas: CasStore, promptHash: string): Promise<Result<string, string>> {
+  const yamlText = await cas.get(promptHash);
+  if (yamlText === null) {
+    return err(`prompt CAS blob missing: ${promptHash}`);
+  }
+  let raw: unknown;
+  try {
+    raw = parseYaml(yamlText) as unknown;
+  } catch {
+    return err(`prompt CAS blob is not valid YAML: ${promptHash}`);
+  }
+  if (raw === null || typeof raw !== "object") {
+    return err(`prompt CAS blob has unexpected shape: ${promptHash}`);
+  }
+  const payload = (raw as Record<string, unknown>).payload;
+  if (typeof payload !== "string") {
+    return err(`prompt CAS blob missing string payload: ${promptHash}`);
+  }
+  return ok(payload);
+}
+
+async function readStartWorkflowIdentity(params: {
+  cas: CasStore;
+  startHash: string;
+}): Promise<Result<{ workflowName: string; depth: number; prompt: string }, string>> {
+  const yamlText = await params.cas.get(params.startHash);
+  if (yamlText === null) {
+    return err(`start node missing in CAS: ${params.startHash}`);
+  }
+  const parsed = parseCasThreadNode(yamlText);
+  if (parsed === null || parsed.kind !== "start") {
+    return err(`CAS blob is not a StartNode: ${params.startHash}`);
+  }
+  const refs = parsed.node.refs;
+  const promptHash = refs[0];
+  if (typeof promptHash !== "string") {
+    return err("StartNode refs[0] must be the prompt hash");
+  }
+  const prompt = await readPromptText(params.cas, promptHash);
+  if (!prompt.ok) {
+    return prompt;
+  }
+  const p = parsed.node.payload;
+  return ok({
+    workflowName: p.name,
+    depth: p.depth,
+    prompt: prompt.value,
+  });
+}
+
+async function payloadToRoleOutput(cas: CasStore, payload: StateNodePayload): Promise<RoleOutput> {
+  let refs: string[] = [];
+  const blob = await cas.get(payload.content);
+  if (blob !== null) {
+    const cn = parseCasThreadNode(blob);
+    if (cn?.kind === "content") {
+      refs = [...cn.node.refs];
+    }
+  }
+  return {
+    role: payload.role,
+    contentHash: payload.content,
+    meta: payload.meta,
+    refs,
+  };
+}
+
+function meaningfulFramesOldestFirst(
+  newestFirst: Array<{ hash: string; payload: StateNodePayload }>,
+): Array<{ hash: string; payload: StateNodePayload }> {
+  const chronological = [...newestFirst].reverse();
+  return chronological.filter((f) => f.payload.role !== END && f.payload.role !== FORK_BRANCH_ROLE);
+}
+
+function selectForkPointStateHash(
+  meaningfulOldestFirst: Array<{ hash: string; payload: StateNodePayload }>,
   fromRole: string | null,
-): Result<ForkHistoricalStep[], string> {
-  if (roleSteps.length === 0) {
+): Result<string | null, string> {
+  if (meaningfulOldestFirst.length === 0) {
     return err("thread has no completed role steps to fork from");
   }
 
   if (fromRole === null) {
-    if (roleSteps.length === 1) {
-      return ok([]);
+    if (meaningfulOldestFirst.length === 1) {
+      return ok(null);
     }
-    return ok(roleSteps.slice(0, -1));
+    const forkFrame = meaningfulOldestFirst[meaningfulOldestFirst.length - 2];
+    if (forkFrame === undefined) {
+      return err("thread has no completed role steps to fork from");
+    }
+    return ok(forkFrame.hash);
   }
 
-  const idx = roleSteps.findIndex((s) => s.role === fromRole);
+  const idx = meaningfulOldestFirst.findIndex((f) => f.payload.role === fromRole);
   if (idx < 0) {
-    const available = orderedUniqueRoles(roleSteps);
+    const available = orderedUniqueRoles(meaningfulOldestFirst.map((f) => f.payload.role));
     return err(`role not found in thread: ${fromRole} (available: ${available.join(", ")})`);
   }
-  return ok(roleSteps.slice(0, idx + 1));
+  const forkFrame = meaningfulOldestFirst[idx];
+  if (forkFrame === undefined) {
+    return err("fork frame missing");
+  }
+  return ok(forkFrame.hash);
+}
+
+function replayFramesThroughForkPoint(
+  meaningfulOldestFirst: Array<{ hash: string; payload: StateNodePayload }>,
+  forkPointHash: string | null,
+): Array<{ hash: string; payload: StateNodePayload }> {
+  if (forkPointHash === null) {
+    return [];
+  }
+  const idx = meaningfulOldestFirst.findIndex((f) => f.hash === forkPointHash);
+  if (idx < 0) {
+    return [];
+  }
+  return meaningfulOldestFirst.slice(0, idx + 1);
+}
+
+async function buildForkContinuation(params: {
+  cas: CasStore;
+  sourceThreadId: string;
+  startHash: string;
+  forkPointStateHash: string | null;
+}): Promise<Result<ForkContinuationOptions, string>> {
+  const { cas, sourceThreadId, startHash, forkPointStateHash } = params;
+
+  if (forkPointStateHash === null) {
+    return ok({
+      startHash,
+      forkHeadHash: startHash,
+      initialChain: EMPTY_CHAIN_STATE,
+    });
+  }
+
+  const yamlText = await cas.get(forkPointStateHash);
+  if (yamlText === null) {
+    return err(`fork point state missing in CAS: ${forkPointStateHash}`);
+  }
+  const parsed = parseCasThreadNode(yamlText);
+  if (parsed === null || parsed.kind !== "state") {
+    return err(`fork point blob is not a StateNode: ${forkPointStateHash}`);
+  }
+  const fpPayload = parsed.node.payload;
+
+  const chainBefore: ChainState = {
+    parentStateHash: forkPointStateHash,
+    parentAncestors: fpPayload.ancestors,
+  };
+  const ancestorsMarker = computeAncestors(chainBefore);
+
+  const emptyContentHash = await putContentNodeWithRefs(cas, "", []);
+  const markerPayload: StateNodePayload = {
+    role: FORK_BRANCH_ROLE,
+    meta: { forkFrom: sourceThreadId },
+    start: startHash,
+    content: emptyContentHash,
+    ancestors: ancestorsMarker,
+    compact: null,
+    timestamp: Date.now(),
+  };
+  const markerHash = await putStateNode(cas, markerPayload);
+
+  const initialChain: ChainState = {
+    parentStateHash: markerHash,
+    parentAncestors: ancestorsMarker,
+  };
+
+  return ok({
+    startHash,
+    forkHeadHash: markerHash,
+    initialChain,
+  });
 }
 
 /**
- * Read `.data.jsonl` text and compute fork payload for the worker `run` command.
+ * Prepare a CAS fork: writes the branch marker {@link StateNode}, registers `threads.json`,
+ * and returns worker payload fields (shared {@link StartNode}, zero ancestor duplication).
  */
-export function buildForkPlan(
-  dataJsonlText: string,
-  fromRole: string | null,
-): Result<ForkPlan, string> {
-  const parsed = parseThreadDataJsonl(dataJsonlText);
-  if (!parsed.ok) {
-    return parsed;
+export async function prepareCasFork(params: {
+  cas: CasStore;
+  bundleDir: string;
+  bundleHash: string;
+  sourceThreadId: string;
+  headHash: string;
+  startHash: string;
+  newThreadId: string;
+  fromRole: string | null;
+}): Promise<Result<CasForkPlan, string>> {
+  const id = await readStartWorkflowIdentity({
+    cas: params.cas,
+    startHash: params.startHash,
+  });
+  if (!id.ok) {
+    return id;
   }
-  const selected = selectForkHistoricalSteps(parsed.value.roleSteps, fromRole);
-  if (!selected.ok) {
-    return selected;
+
+  const newestFirst = await walkStateFramesNewestFirst(params.cas, params.headHash);
+  const meaningful = meaningfulFramesOldestFirst(newestFirst);
+
+  const forkPoint = selectForkPointStateHash(meaningful, params.fromRole);
+  if (!forkPoint.ok) {
+    return forkPoint;
   }
-  const { start } = parsed.value;
+
+  const replayFrames = replayFramesThroughForkPoint(meaningful, forkPoint.value);
+  const steps: RoleOutput[] = [];
+  const stepTimestamps: number[] = [];
+  for (const fr of replayFrames) {
+    steps.push(await payloadToRoleOutput(params.cas, fr.payload));
+    stepTimestamps.push(fr.payload.timestamp);
+  }
+
+  const cont = await buildForkContinuation({
+    cas: params.cas,
+    sourceThreadId: params.sourceThreadId,
+    startHash: params.startHash,
+    forkPointStateHash: forkPoint.value,
+  });
+  if (!cont.ok) {
+    return cont;
+  }
+
+  await upsertThreadEntry(params.bundleDir, params.newThreadId, {
+    head: cont.value.forkHeadHash,
+    start: params.startHash,
+    updatedAt: Date.now(),
+  });
+
   return ok({
-    workflowName: start.workflowName,
-    hash: start.hash,
-    sourceThreadId: start.threadId,
-    prompt: start.prompt,
-    runOptions: { maxRounds: start.maxRounds, depth: start.depth },
-    historicalSteps: selected.value,
+    workflowName: id.value.workflowName,
+    hash: params.bundleHash,
+    sourceThreadId: params.sourceThreadId,
+    prompt: id.value.prompt,
+    runOptions: { depth: id.value.depth },
+    steps,
+    stepTimestamps,
+    forkContinuation: cont.value,
   });
 }

packages/workflow-execute/src/engine/gc.ts

@@ -1,122 +1,182 @@
-import { readdir, readFile } from "node:fs/promises";
+import type { Stats } from "node:fs";
+import { readdir, readFile, stat } from "node:fs/promises";
 import { join } from "node:path";
-import { type CasStore, createCasStore } from "@uncaged/workflow-cas";
+import { type CasStore, createCasStore, findReachableHashes } from "@uncaged/workflow-cas";
 import { err, getGlobalCasDir, ok, type Result } from "@uncaged/workflow-util";
-import { parseThreadDataJsonl } from "./fork-thread.js";
+
+import type { ThreadHistoryEntry, ThreadIndex } from "./threads-index.js";
+import { readThreadsIndex } from "./threads-index.js";
 import type { GcResult } from "./types.js";
 
-async function listThreadDataJsonlPaths(storageRoot: string): Promise<Result<string[], string>> {
-  const logsRoot = join(storageRoot, "logs");
-  const paths: string[] = [];
-  let hashes: string[];
+function isPlainObject(v: unknown): v is Record<string, unknown> {
+  return v !== null && typeof v === "object" && !Array.isArray(v);
+}
+
+function parseHistoryLine(jsonLine: string): ThreadHistoryEntry | null {
+  let raw: unknown;
   try {
-    hashes = await readdir(logsRoot);
+    raw = JSON.parse(jsonLine) as unknown;
+  } catch {
+    return null;
+  }
+  if (!isPlainObject(raw)) {
+    return null;
+  }
+  const threadId = raw.threadId;
+  const head = raw.head;
+  const start = raw.start;
+  const completedAt = raw.completedAt;
+  if (
+    typeof threadId !== "string" ||
+    typeof head !== "string" ||
+    typeof start !== "string" ||
+    typeof completedAt !== "number"
+  ) {
+    return null;
+  }
+  return { threadId, head, start, completedAt };
+}
+
+// biome-ignore lint/complexity/noExcessiveCognitiveComplexity: walks threads index + optional history dir
+async function collectGcRootsFromBundle(bundleDir: string): Promise<Result<string[], string>> {
+  const roots: string[] = [];
+
+  let activeIndex: ThreadIndex;
+  try {
+    activeIndex = await readThreadsIndex(bundleDir);
+  } catch (e) {
+    return err(`failed to read threads.json under ${bundleDir}: ${String(e)}`);
+  }
+
+  for (const entry of Object.values(activeIndex)) {
+    roots.push(entry.head);
+    roots.push(entry.start);
+  }
+
+  const histDir = join(bundleDir, "history");
+  let histFiles: string[];
+  try {
+    histFiles = await readdir(histDir);
+  } catch (e) {
+    const errObj = e as NodeJS.ErrnoException;
+    if (errObj.code === "ENOENT") {
+      return ok(roots);
+    }
+    return err(`failed to read history directory ${histDir}: ${String(e)}`);
+  }
+
+  for (const name of histFiles) {
+    if (!name.endsWith(".jsonl")) {
+      continue;
+    }
+    let text: string;
+    try {
+      text = await readFile(join(histDir, name), "utf8");
+    } catch (e) {
+      return err(`failed to read history file ${name}: ${String(e)}`);
+    }
+    for (const line of text.split("\n")) {
+      const trimmed = line.trim();
+      if (trimmed === "") {
+        continue;
+      }
+      const entry = parseHistoryLine(trimmed);
+      if (entry === null) {
+        continue;
+      }
+      roots.push(entry.head);
+      roots.push(entry.start);
+    }
+  }
+
+  return ok(roots);
+}
+
+async function collectAllGcRoots(storageRoot: string): Promise<Result<string[], string>> {
+  const bundlesRoot = join(storageRoot, "bundles");
+  let entries: string[];
+  try {
+    entries = await readdir(bundlesRoot);
   } catch (e) {
     const errObj = e as NodeJS.ErrnoException;
     if (errObj.code === "ENOENT") {
       return ok([]);
     }
-    return err(`failed to read logs directory: ${String(e)}`);
+    return err(`failed to read bundles directory: ${String(e)}`);
   }
 
-  for (const hash of hashes) {
-    const dir = join(logsRoot, hash);
-    let entries: string[];
+  const roots: string[] = [];
+  for (const name of entries) {
+    const bundleDir = join(bundlesRoot, name);
+    let st: Stats;
     try {
-      entries = await readdir(dir);
+      st = await stat(bundleDir);
     } catch {
       continue;
     }
-    for (const fileName of entries) {
-      if (fileName.endsWith(".data.jsonl")) {
-        paths.push(join(dir, fileName));
-      }
+    if (!st.isDirectory()) {
+      continue;
     }
+    const chunk = await collectGcRootsFromBundle(bundleDir);
+    if (!chunk.ok) {
+      return chunk;
+    }
+    roots.push(...chunk.value);
   }
 
-  paths.sort();
-  return ok(paths);
+  return ok(roots);
 }
 
-async function collectActiveRefsFromDataPaths(
-  dataPaths: string[],
-): Promise<Result<Set<string>, string>> {
-  const activeRefs = new Set<string>();
-  for (const dataPath of dataPaths) {
-    let text: string;
-    try {
-      text = await readFile(dataPath, "utf8");
-    } catch (e) {
-      return err(`failed to read ${dataPath}: ${String(e)}`);
-    }
-    const parsed = parseThreadDataJsonl(text);
-    if (!parsed.ok) {
-      return err(`${dataPath}: ${parsed.error}`);
-    }
-    for (const step of parsed.value.roleSteps) {
-      for (const ref of step.refs) {
-        activeRefs.add(ref);
-      }
-    }
-  }
-  return ok(activeRefs);
-}
-
-async function deleteCasNotInSet(
-  cas: CasStore,
-  activeRefs: Set<string>,
-): Promise<Result<string[], string>> {
+async function deleteCasNotMarked(cas: CasStore, marked: ReadonlySet<string>): Promise<string[]> {
   let listed: string[];
   try {
     listed = await cas.list();
   } catch (e) {
-    return err(`failed to list cas entries: ${String(e)}`);
+    throw new Error(`failed to list cas entries: ${String(e)}`);
   }
 
   const deletedHashes: string[] = [];
   for (const hash of listed) {
-    if (activeRefs.has(hash)) {
+    if (marked.has(hash)) {
       continue;
     }
     try {
       await cas.delete(hash);
     } catch (e) {
-      return err(`failed to delete cas ${hash}: ${String(e)}`);
+      throw new Error(`failed to delete cas ${hash}: ${String(e)}`);
     }
     deletedHashes.push(hash);
   }
 
   deletedHashes.sort();
-  return ok(deletedHashes);
+  return deletedHashes;
 }
 
 /**
- * Mark-and-sweep CAS GC: collect `refs` from all thread `.data.jsonl` files under `storageRoot`,
- * then delete CAS blobs not referenced by any surviving thread data.
+ * Mark-and-sweep CAS GC: roots are every `head` / `start` hash from `threads.json` and
+ * `history/*.jsonl` across bundle dirs; marks closure via `refs[]`; deletes unreachable blobs.
  */
 export async function garbageCollectCas(storageRoot: string): Promise<Result<GcResult, string>> {
-  const pathsResult = await listThreadDataJsonlPaths(storageRoot);
-  if (!pathsResult.ok) {
-    return pathsResult;
+  const rootsResult = await collectAllGcRoots(storageRoot);
+  if (!rootsResult.ok) {
+    return rootsResult;
   }
-  const paths = pathsResult.value;
-
-  const refsResult = await collectActiveRefsFromDataPaths(paths);
-  if (!refsResult.ok) {
-    return refsResult;
-  }
-  const activeRefs = refsResult.value;
+  const roots = rootsResult.value;
 
   const cas = createCasStore(getGlobalCasDir(storageRoot));
-  const deletedResult = await deleteCasNotInSet(cas, activeRefs);
-  if (!deletedResult.ok) {
-    return deletedResult;
+
+  const marked = await findReachableHashes(roots, cas);
+
+  let deletedHashes: string[];
+  try {
+    deletedHashes = await deleteCasNotMarked(cas, marked);
+  } catch (e) {
+    return err(String(e));
   }
-  const deletedHashes = deletedResult.value;
 
   return ok({
-    scannedThreads: paths.length,
-    activeRefs: activeRefs.size,
+    scannedThreads: roots.length,
+    activeRefs: marked.size,
     deletedEntries: deletedHashes.length,
     deletedHashes,
   });